Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.015G087800.1 |
Family | PL1 |
Protein Properties | Length: 425 Molecular Weight: 46592.6 Isoelectric Point: 7.6085 |
Chromosome | Chromosome/Scaffold: 15 Start: 11047424 End: 11049516 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 138 | 343 | 0 |
IQEEPLWIIFARDMTIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLHIHDCKQGGNAMVRDSPKHFGWRTVSDGDGVSIFGGTHVWVD HNSLSNCNDGLVDAIHGSSAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRFVA |
Full Sequence |
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Protein Sequence Length: 425 Download |
MSLTPFPLFS QFLSSQRRQQ TMANPSLCLL FLLSLLTPAL ISSSPVQDPE LVVQEVHRAI 60 NASRRKLGYL SCGTGNPIDD CWRCDPNWEK NRQRLADCAI GFGKNAIGGR DGKIYVVTDS 120 GNDDPVNPRP GTLRHAVIQE EPLWIIFARD MTIQLKEELI MNSFKTIDGR GASVHIAGGP 180 CITIQYVTNI IIHGLHIHDC KQGGNAMVRD SPKHFGWRTV SDGDGVSIFG GTHVWVDHNS 240 LSNCNDGLVD AIHGSSAITI SNNYMTHHDK VMLLGHSDSY TQDKNMQVTI AFNHFGEGLV 300 QRMPRCRHGY FHVVNNDYTH WEMYAIGGSA NPTINSQGNR FVAPDIRFSK EVTKHEDAPE 360 SEWKHWNWRS EGDLLMNGAF FTASGAGASS SYARASSLGA RPSSLVGTIT VGAGALGCRK 420 GARC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-27 | 163 | 341 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-74 | 156 | 341 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-82 | 150 | 345 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADB90475.1 | 0 | 47 | 424 | 34 | 411 | pectate lyase [Gossypium herbaceum] |
GenBank | ADB90476.1 | 0 | 47 | 424 | 34 | 411 | pectate lyase [Gossypium raimondii] |
GenBank | ADB90479.1 | 0 | 47 | 424 | 34 | 411 | pectate lyase [Gossypium barbadense] |
RefSeq | XP_002318694.1 | 0 | 22 | 424 | 1 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322215.1 | 0 | 22 | 424 | 1 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 76 | 385 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 76 | 385 | 2 | 313 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-18 | 133 | 342 | 38 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.00000000000001 | 230 | 350 | 151 | 296 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.00000000000001 | 230 | 350 | 151 | 296 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |