Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.015G110700.1 |
Family | CE8 |
Protein Properties | Length: 363 Molecular Weight: 39308.7 Isoelectric Point: 9.9342 |
Chromosome | Chromosome/Scaffold: 15 Start: 12690411 End: 12692991 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 69 | 352 | 0 |
IRVRKDGSGDFKTLTGAVRSISSGNTQRVIVDIGSGVYNEKIQIEKEKPFVTFKGSASSMPTLTFAGTARVYGTVYSATLQVDSDYFVASNIIIKNSSPR PSGKLKEQAVALRIGGDKAAFYNCRLIGFQDTLCDDKGRHFFKDCYIEGTVDFIFGSGKSLYLGTAINVLADQGLAVITAQARNKEDDTGFSFVHCKVNG IGKWAFLGRAWTERPRVVFAFTTMSSVVNPGGWSDNQHPERDRIVSFGEYKCKGPGSNPSGRVKFSRQLTPQQVKPFLSLAYIE |
Full Sequence |
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Protein Sequence Length: 363 Download |
MSTGKVTGIA AFVILLLVST TAGSKDTSPI PGEPSSLNSW FHANVKSYTQ RNGTLDPALE 60 TAEAKPKTIR VRKDGSGDFK TLTGAVRSIS SGNTQRVIVD IGSGVYNEKI QIEKEKPFVT 120 FKGSASSMPT LTFAGTARVY GTVYSATLQV DSDYFVASNI IIKNSSPRPS GKLKEQAVAL 180 RIGGDKAAFY NCRLIGFQDT LCDDKGRHFF KDCYIEGTVD FIFGSGKSLY LGTAINVLAD 240 QGLAVITAQA RNKEDDTGFS FVHCKVNGIG KWAFLGRAWT ERPRVVFAFT TMSSVVNPGG 300 WSDNQHPERD RIVSFGEYKC KGPGSNPSGR VKFSRQLTPQ QVKPFLSLAY IEGSKWLLPP 360 PN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 3.0e-85 | 69 | 357 | 290 | + putative pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-85 | 67 | 357 | 300 | + pectinesterase | ||
PLN02304 | PLN02304 | 3.0e-88 | 68 | 359 | 302 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-108 | 11 | 359 | 363 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 1 | 362 | 364 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309337.1 | 0 | 10 | 362 | 13 | 368 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318197.1 | 0 | 4 | 362 | 2 | 364 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002321778.1 | 0 | 1 | 362 | 1 | 362 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333446.1 | 0 | 10 | 362 | 10 | 365 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511043.1 | 0 | 8 | 361 | 9 | 364 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 4e-38 | 60 | 357 | 1 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5e-36 | 71 | 357 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 6e-20 | 79 | 345 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 6e-20 | 79 | 345 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 6e-20 | 79 | 345 | 18 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |