y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.016G017700.1 |
Family | CE8 |
Protein Properties | Length: 398 Molecular Weight: 43753.4 Isoelectric Point: 7.0234 |
Chromosome | Chromosome/Scaffold: 16 Start: 948849 End: 951432 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 95 | 388 | 0 |
ICVDRNGCCNFTTVQSAVDSVMNFSQKRTIIWINSGIYYEKVTVLKYKQNITFQGQGYTSTAIVWNDTAKSSNGTFYSGSVQVFSNNFIAKNISFMNVAP IPSPGDIGAQAVAIRISGDQAFFLGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNARSLYENCQLISMANPVAPGAKGINGAVTAHGRISKDENTG FAFVNCSLGGTGRIWLGRAWRPYSSVIFSYTSMTDIVVPEGWNDFNDPTRDQTIFYGEYNCLGAGANMTMRAPYVQKLNDTQASPFLNVSFIDG |
Full Sequence |
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Protein Sequence Length: 398 Download |
MSLRNISFTL LVALLAIMAS AVFISPNLSL LHQLIELGLA TFSSPFIATF IPYSIGGRRH 60 HHHHNKHPSD GKIVNICEDF PPDFPPPDTN TTSTICVDRN GCCNFTTVQS AVDSVMNFSQ 120 KRTIIWINSG IYYEKVTVLK YKQNITFQGQ GYTSTAIVWN DTAKSSNGTF YSGSVQVFSN 180 NFIAKNISFM NVAPIPSPGD IGAQAVAIRI SGDQAFFLGC GFFGAQDTLH DDRGRHYFKD 240 CYIQGSIDFI FGNARSLYEN CQLISMANPV APGAKGINGA VTAHGRISKD ENTGFAFVNC 300 SLGGTGRIWL GRAWRPYSSV IFSYTSMTDI VVPEGWNDFN DPTRDQTIFY GEYNCLGAGA 360 NMTMRAPYVQ KLNDTQASPF LNVSFIDGDQ WLQSFIN* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 3.0e-96 | 89 | 393 | 313 | + pectinesterase | ||
PLN02634 | PLN02634 | 6.0e-104 | 95 | 392 | 305 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-109 | 94 | 392 | 300 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 2.0e-123 | 94 | 393 | 307 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 0 | 18 | 397 | 380 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN08648.1 | 0 | 1 | 394 | 1 | 389 | Pectinesterase [Medicago truncatula] |
RefSeq | NP_172023.1 | 0 | 68 | 393 | 63 | 389 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002267842.1 | 0 | 1 | 395 | 1 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323171.1 | 0 | 18 | 397 | 1 | 380 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521065.1 | 0 | 25 | 395 | 28 | 394 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 95 | 394 | 9 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7e-39 | 96 | 394 | 6 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 5e-16 | 124 | 380 | 36 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 5e-16 | 124 | 380 | 36 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 5e-16 | 124 | 380 | 36 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |