| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.016G025500.5 |
| Family | GH51 |
| Protein Properties | Length: 551 Molecular Weight: 60693 Isoelectric Point: 5.0256 |
| Chromosome | Chromosome/Scaffold: 16 Start: 1436649 End: 1441717 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH51 | 101 | 533 | 0 |
| KGVIWFDQVSAMPLDTYKGHGFRNELIEMIDDIKPQFVRFPGGCFVEGEWLRNAFRWKESIGPWEERPGHFGDVWMYWTDDGLGYFEFLQLTEDLGARPI WVFNNGISHQDQVDTTAVSPFVQEALDGLEFARGDSNSKWGSVRAAMGHPEPFDLKYVAVGNEDCGKKNYRGNYLKFYNAIRSAYPDIKIISNCDGSSRS LDHPADYYDYHVYTSASSLFSMTRQFDRTSRTGPKAFVSEYAVTGKDAGTGSLLAALAEAGFLIGLEKNSDIVEMASYAPLFVNANDRRWNPDAIVFNSS MHYGTPSYWVQKFFRESSGATLLDAKLQTNSSTLVASAITWQNSDGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPK KVVPAQTMLENADKDMDVVLSPYSLTSFDLLTE | |||
| Full Sequence |
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| Protein Sequence Length: 551 Download |
| MDVLCDSTGG NICPAGGVGI YNPGFWGMNI EQGKAYKVVL YVRSLGSINV SVSLTSSDGS 60 QILASANIVD SDVSNWTKAE VLLEAKGTNP NSRLQLTTSR KGVIWFDQVS AMPLDTYKGH 120 GFRNELIEMI DDIKPQFVRF PGGCFVEGEW LRNAFRWKES IGPWEERPGH FGDVWMYWTD 180 DGLGYFEFLQ LTEDLGARPI WVFNNGISHQ DQVDTTAVSP FVQEALDGLE FARGDSNSKW 240 GSVRAAMGHP EPFDLKYVAV GNEDCGKKNY RGNYLKFYNA IRSAYPDIKI ISNCDGSSRS 300 LDHPADYYDY HVYTSASSLF SMTRQFDRTS RTGPKAFVSE YAVTGKDAGT GSLLAALAEA 360 GFLIGLEKNS DIVEMASYAP LFVNANDRRW NPDAIVFNSS MHYGTPSYWV QKFFRESSGA 420 TLLDAKLQTN SSTLVASAIT WQNSDGKTYL KIKIVNFGNS KVNLKVSIDG LGLSSQLSGS 480 TKTVLTSSNL MDENSFANPK KVVPAQTMLE NADKDMDVVL SPYSLTSFDL LTESNNIRMP 540 QTDSLSRSSI * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3534 | AbfA | 7.0e-33 | 121 | 524 | 483 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] | ||
| pfam06964 | Alpha-L-AF_C | 4.0e-39 | 339 | 524 | 204 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| smart00813 | Alpha-L-AF_C | 8.0e-47 | 339 | 524 | 198 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAP97437.1 | 0 | 1 | 550 | 120 | 675 | alpha-L-arabinofuranosidase [Malus x domestica] |
| GenBank | ABV32544.1 | 0 | 1 | 550 | 120 | 677 | alpha-L-arabinofuranosidase protein [Prunus persica] |
| RefSeq | XP_002307940.1 | 0 | 1 | 550 | 120 | 670 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322584.1 | 0 | 1 | 550 | 124 | 667 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523672.1 | 0 | 1 | 550 | 124 | 678 | Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 2e-23 | 121 | 533 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 2e-23 | 121 | 533 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 2e-23 | 121 | 533 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 2e-23 | 121 | 533 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 2e-23 | 121 | 533 | 48 | 484 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO852683 | 413 | 121 | 530 | 0 |
| HO780740 | 407 | 149 | 551 | 0 |
| GT046204 | 348 | 106 | 453 | 0 |
| HO807291 | 318 | 30 | 345 | 0 |
| GT048615 | 348 | 166 | 512 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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