| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.016G051200.1 |
| Family | GH28 |
| Protein Properties | Length: 475 Molecular Weight: 52639.6 Isoelectric Point: 6.6343 |
| Chromosome | Chromosome/Scaffold: 16 Start: 3270667 End: 3274644 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 80 | 395 | 0 |
| FPPGIYLTATIHLKSNVVLNIQEGATLLGGTKLEDYPKEFNRWYVVLAENASDVGITGGGVVDGQGLKFVKRFNERKNVMVSWNSTGACLGDECRPRLVG FIGCTNVKVWNVRLSEPAYWCLHIVQCLNTHISDVSIYGDFNSPNNDGIDIEDSNNTLITRCHIDTGDDAICPKTYTGPIYNLTATDCWIRTKSSAIKLG SASWFEFKGLVFDNITIVDSHRGLGLQIRDGGNVSDITFSNINISTRYYDPSWWGRAEPIYVTTCPRHSSSKEGSISNLQFINITTNSENGVFLSGSKGG LLSNLRFINMNLTFRR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 475 Download |
| MTTPILQLIF LLILSPLRQL PPSKPATPTR IQLPHPTPTT LSVTDFGAIG DGIHYDTEAI 60 QSTINSCPTT PPTKACHVNF PPGIYLTATI HLKSNVVLNI QEGATLLGGT KLEDYPKEFN 120 RWYVVLAENA SDVGITGGGV VDGQGLKFVK RFNERKNVMV SWNSTGACLG DECRPRLVGF 180 IGCTNVKVWN VRLSEPAYWC LHIVQCLNTH ISDVSIYGDF NSPNNDGIDI EDSNNTLITR 240 CHIDTGDDAI CPKTYTGPIY NLTATDCWIR TKSSAIKLGS ASWFEFKGLV FDNITIVDSH 300 RGLGLQIRDG GNVSDITFSN INISTRYYDP SWWGRAEPIY VTTCPRHSSS KEGSISNLQF 360 INITTNSENG VFLSGSKGGL LSNLRFINMN LTFRRWTTYP GGLVDYRPGC QGLVNHSAAG 420 IIMEHIEGFE VENVNMRWSD YQNEPWDNPL DFRPSTVNNI SFLNFHSALY KQMK* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 3.0e-8 | 174 | 267 | 94 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 2.0e-9 | 175 | 250 | 76 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-12 | 175 | 371 | 207 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 8.0e-13 | 37 | 323 | 318 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 2.0e-45 | 28 | 321 | 328 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 29 | 473 | 24 | 474 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 29 | 473 | 24 | 474 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 8 | 468 | 13 | 465 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 8 | 468 | 13 | 460 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 29 | 473 | 1 | 445 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 1e-20 | 38 | 320 | 154 | 484 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
| PDB | 2uvf_A | 1e-20 | 38 | 320 | 154 | 484 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
| PDB | 2uve_B | 1e-20 | 38 | 320 | 154 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 1e-20 | 38 | 320 | 154 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 3jur_D | 6e-19 | 31 | 318 | 18 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
