Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.016G054800.1 |
Family | GH28 |
Protein Properties | Length: 454 Molecular Weight: 49372.8 Isoelectric Point: 6.5838 |
Chromosome | Chromosome/Scaffold: 16 Start: 3582671 End: 3585971 |
Description | polygalacturonase abscission zone A. thaliana |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 110 | 442 | 0 |
KEACSSPEGAIIVVPEYTYRLKPIRFQGPCKSNIALQVHGTIEASCNQSDYKKDSRHWLLFDSVDNLLVEGGGTIDGNGKIWWENSCKVNKSLPCKEAPT AVTFFECQNLIVKDLKIQNAQQMHVTFKKSNHVLVSNLTVISPEESPNTDGIHITKTQNIQITDSVIGTGDDCISIVSGSHNVQATGITCGPGHGISIGS LGAHDSKDHVSGVTVKGAKLSGTANGVRIKTWQGGSGNVSNIKFQNIEMNKVTNPIIIDQNYCDQDKPCKQQKSALQVKNVMYKNIKGTSASEVAMRFDC SKAYPCQGILLQDINLERAGDRTAKALCNNVKL |
Full Sequence |
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Protein Sequence Length: 454 Download |
MALQRALLYS FFIISISIIS SYSCSQEDPL NNYLEEQASG YDSQAYPSYI EDGGFKDLIK 60 LRSDVLVLQT FSKEGSKSTP VITVGVKDFG VKDDGGDDTD DTETFERAWK EACSSPEGAI 120 IVVPEYTYRL KPIRFQGPCK SNIALQVHGT IEASCNQSDY KKDSRHWLLF DSVDNLLVEG 180 GGTIDGNGKI WWENSCKVNK SLPCKEAPTA VTFFECQNLI VKDLKIQNAQ QMHVTFKKSN 240 HVLVSNLTVI SPEESPNTDG IHITKTQNIQ ITDSVIGTGD DCISIVSGSH NVQATGITCG 300 PGHGISIGSL GAHDSKDHVS GVTVKGAKLS GTANGVRIKT WQGGSGNVSN IKFQNIEMNK 360 VTNPIIIDQN YCDQDKPCKQ QKSALQVKNV MYKNIKGTSA SEVAMRFDCS KAYPCQGILL 420 QDINLERAGD RTAKALCNNV KLATLGVVYP KCS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 4.0e-85 | 107 | 450 | 347 | + polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-100 | 108 | 451 | 348 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-126 | 113 | 441 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-138 | 108 | 450 | 345 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-149 | 51 | 453 | 408 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 1 | 452 | 1 | 455 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
Swiss-Prot | P35336 | 0 | 1 | 452 | 1 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002308956.1 | 0 | 13 | 452 | 1 | 442 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322711.1 | 0 | 1 | 453 | 1 | 453 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529616.1 | 0 | 21 | 452 | 31 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-23 | 181 | 440 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-23 | 181 | 440 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-23 | 181 | 440 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-23 | 181 | 440 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-23 | 181 | 440 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |