| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.016G064800.2 |
| Family | AA7 |
| Protein Properties | Length: 567 Molecular Weight: 62488.9 Isoelectric Point: 6.813 |
| Chromosome | Chromosome/Scaffold: 16 Start: 4560081 End: 4569713 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| AA7 | 143 | 338 | 6.5e-27 |
| NIPDVVVFPRSEEEVSNIVKSCDKHKVPIVPYGGATSIEGHTLSPHGGVCIDMSLMQNVKALHVEDMDVVVEPGIGWMELNEYLEPHGLFFPLDPGPGAT IGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTVKDAADV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 567 Download |
| MAFTCWVSRL RSSYSKTITN LRSSFFHRLR TRGANTTAIT SPYHFSKQNP FRFTCSNSLL 60 PITLAGSLAI HFQSPPPLCD ASLDSPGIGG KGSTEFVVQG SQKHLPQELI EELKAICQDN 120 MSMDYDERYF HGKPQHSFHK AVNIPDVVVF PRSEEEVSNI VKSCDKHKVP IVPYGGATSI 180 EGHTLSPHGG VCIDMSLMQN VKALHVEDMD VVVEPGIGWM ELNEYLEPHG LFFPLDPGPG 240 ATIGGMCATR CSGSLAVRYG TMRDNVISLK VVLPNGDVVK TASRARKSAA GYDLTRLVIG 300 SEGTLGVITE VTLRLQKIPQ HSVVAMCNFP TVKDAADVAI ATMLSGIQVS RVELMDEVQV 360 RAINIANDKN LPEFPTLMFE FIGTEAYARE QTLIVQKIIS EHRGSDFVFA EDPEAKKELW 420 KIRKEALWAC FAMEPKYEAM ISDVCVPLSH LAELISRSKK ELDASPLVCT VIAHAGDGNF 480 HTVILFDPNQ EDHRREAERL NHFMVHSALS MEGTCTGEHG VGTGKMKYLE KELGVEALKT 540 MKRIKNALDP NNIMNPGKLI PPHVCF* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 5.0e-53 | 144 | 565 | 431 | + glycolate oxidase subunit GlcD; Provisional | ||
| pfam02913 | FAD-oxidase_C | 6.0e-70 | 318 | 559 | 247 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
| TIGR00387 | glcD | 3.0e-96 | 148 | 558 | 419 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 4.0e-128 | 112 | 562 | 465 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| PLN02805 | PLN02805 | 0 | 9 | 566 | 561 | + D-lactate dehydrogenase [cytochrome] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001142976.1 | 0 | 79 | 566 | 69 | 555 | hypothetical protein LOC100275430 [Zea mays] |
| RefSeq | NP_568170.1 | 0 | 1 | 566 | 1 | 567 | FAD linked oxidase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267321.1 | 0 | 1 | 566 | 1 | 566 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322755.1 | 0 | 88 | 566 | 1 | 480 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524111.1 | 0 | 1 | 566 | 1 | 555 | d-lactate dehydrogenase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 5e-40 | 96 | 560 | 4 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 5e-40 | 96 | 560 | 4 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 5e-40 | 96 | 560 | 4 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_C | 5e-40 | 96 | 560 | 4 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_B | 5e-40 | 96 | 560 | 4 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| photorespiration | RXN-969 | EC-1.1.3 | glycolate oxidase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| EX265038 | 322 | 160 | 480 | 0 |
| DY305587 | 368 | 199 | 566 | 0 |
| EX261606 | 322 | 216 | 533 | 0 |
| CN521074 | 270 | 1 | 268 | 0 |
| EX261606 | 50 | 514 | 563 | 0.027 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |