Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.016G075700.1 |
Family | GT41 |
Protein Properties | Length: 918 Molecular Weight: 102029 Isoelectric Point: 5.9459 |
Chromosome | Chromosome/Scaffold: 16 Start: 5705688 End: 5715832 |
Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT41 | 364 | 878 | 0 |
SLSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIMANPTYAEAYNNLGVLYRDAGNISMAISAYEQCLEIDPDSRNAGQNRLLAMNYINEGHDDKLFE AHRDWGRRFMRLYPQYTSWDNPKVPDRPLVIGYVSPDYFTHSVSYFIEAPLVYHVYANYKVVVYSAVVKPDAKTNRFKEKVLKRGGIWRDIYGIDEKKVA IMVREDKVDILVELTGHTANNKLGMMACRPAPVQVTWIGYPNTTGLPTIDYRITDSFADPPDTKQKHVEELIRLPECFLCYIPSPEAGPVAPTPALSNGF ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRQRFLTMLEQLGLEPLHVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESL YMGVPCVTMAGAVHAHNVGASLLSNVGLGHLVAKNEEEYVQSALQLASDIAALSNLRMSLRDLMSKSPVCDGPNFTLGLETTYRNMWHRYCKGDVPSLRR IELLQQQEVPKEVPI |
Full Sequence |
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Protein Sequence Length: 918 Download |
MAWTENDAGS VREKELIEDN GFLKGSQPST GTSGSPVVSS PVQKGFEGKD ALSYANILRS 60 RNKFADALAL YESVLEKDSG IVEAYIGKGI CLQMQNMGRL AFDSFAEAIK LDPQNACALT 120 HCGILYKDEG RLLEAAESYH KALKADLSYK PASECLAIVL TDLGTSLKLS GNTQEGIQKY 180 YEALKVDPHY APAYYNLGVV YSEMMQYDTA LSCYEKAAME RPMYAEAYCN MGVIYKNRGD 240 LESAIACYER CLAVSPNFEI AKNNMAIALT DFGTKVKLEG DISQGVAYYK KALYYNWHYA 300 DAMYNLGVAY GEMLKFEMAI VFYELAFNFN PHCAEACNNL GVIYKDRDNL DKAVECYQAN 360 SDTSLSIKPN FSQSLNNLGV VYTVQGKMDA AASMIEKAIM ANPTYAEAYN NLGVLYRDAG 420 NISMAISAYE QCLEIDPDSR NAGQNRLLAM NYINEGHDDK LFEAHRDWGR RFMRLYPQYT 480 SWDNPKVPDR PLVIGYVSPD YFTHSVSYFI EAPLVYHVYA NYKVVVYSAV VKPDAKTNRF 540 KEKVLKRGGI WRDIYGIDEK KVAIMVREDK VDILVELTGH TANNKLGMMA CRPAPVQVTW 600 IGYPNTTGLP TIDYRITDSF ADPPDTKQKH VEELIRLPEC FLCYIPSPEA GPVAPTPALS 660 NGFITFGSFN NLAKITPKVL QVWARILCAV PNSRLVVKCK PFCCDSVRQR FLTMLEQLGL 720 EPLHVDLLPL ILLNHDHMQA YSLMDISLDT FPYAGTTTTC ESLYMGVPCV TMAGAVHAHN 780 VGASLLSNVG LGHLVAKNEE EYVQSALQLA SDIAALSNLR MSLRDLMSKS PVCDGPNFTL 840 GLETTYRNMW HRYCKGDVPS LRRIELLQQQ EVPKEVPIKN TDSTRITSSR DGPPESIKAN 900 GFSAVSLPKV DHTINLG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00189 | TPR | 4.0e-18 | 335 | 438 | 104 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
pfam13844 | Glyco_transf_41 | 2.0e-18 | 492 | 641 | 151 | + Glycosyl transferase family 41. This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. | ||
cd00189 | TPR | 4.0e-20 | 159 | 257 | 99 | + Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | ||
pfam13844 | Glyco_transf_41 | 3.0e-22 | 664 | 850 | 187 | + Glycosyl transferase family 41. This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1. | ||
COG3914 | Spy | 4.0e-87 | 317 | 853 | 584 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] |
Gene Ontology | |
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GO Term | Description |
GO:0005515 | protein binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | O82039 | 0 | 1 | 903 | 1 | 903 | SPY_PETHY RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=PhSPY |
RefSeq | XP_002281883.1 | 0 | 1 | 913 | 1 | 906 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002308458.1 | 0 | 1 | 913 | 1 | 916 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323412.1 | 0 | 1 | 917 | 1 | 917 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530535.1 | 0 | 1 | 906 | 1 | 903 | o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4gz6_D | 1e-37 | 222 | 642 | 6 | 386 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 4gz6_D | 1e-22 | 664 | 859 | 524 | 715 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 4gz6_D | 3e-18 | 113 | 277 | 6 | 169 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 4gz6_D | 0.0000001 | 55 | 198 | 16 | 152 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 4gz6_D | 0.0002 | 55 | 159 | 50 | 158 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY295408 | 400 | 434 | 831 | 0 |
GT041789 | 341 | 345 | 685 | 0 |
GT041789 | 109 | 172 | 278 | 0.0000000000005 |
GT041789 | 125 | 236 | 358 | 0.000006 |
GT041789 | 111 | 281 | 389 | 0.002 |
Sequence Alignments (This image is cropped. Click for full image.) |
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