| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.016G080600.1 |
| Family | PL1 |
| Protein Properties | Length: 387 Molecular Weight: 43119.7 Isoelectric Point: 8.4104 |
| Chromosome | Chromosome/Scaffold: 16 Start: 6237853 End: 6242384 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 115 | 294 | 0 |
| IVFEVSGTIQLRSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITISR CYFGQHDKTMLIGADPTHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQSNIYEA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 387 Download |
| MGNSHDHGHR RKFRDNGNVP FPDKTAAAPS ASQPVPPFIY QPQIPTSSTR TPKMATALPY 60 PHVDSSLRAL AAQAEGFGRS ANGGLHGPIY YVTTLADDGP GSLRDGCRKK EPLWIVFEVS 120 GTIQLRSYLN VSSYKTIDGR GQRIKLTGKG LRLKECEHVI ICNLEFEGGR GPDVDGIQIK 180 PKSKHIWIDR CSLRDYDDGL IDITRESTDI TISRCYFGQH DKTMLIGADP THVGDRCIRV 240 TIHHCFFDGT RQRHPRVRFG KVHLYNNYTR NWGIYAVCAS VESQIYSQSN IYEAGQKKIA 300 FKYLSEKAAD KEKARSGSIR SEGDLFVTGT QAGLMTEDGE CCMFHPSEYY PTWTVEPPTD 360 SLKQVLQHCT GWQCVPRPAD QPLAAQ* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 1.0e-39 | 110 | 290 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 8.0e-49 | 83 | 365 | 302 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 1.0e-69 | 129 | 295 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 1 | 386 | 1 | 386 | unknown [Populus trichocarpa] |
| GenBank | ABK96132.1 | 0 | 1 | 386 | 1 | 389 | unknown [Populus trichocarpa] |
| RefSeq | XP_002277576.1 | 0 | 1 | 385 | 1 | 373 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309435.1 | 0 | 54 | 386 | 1 | 333 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323433.1 | 0 | 54 | 386 | 1 | 333 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 6e-39 | 64 | 350 | 15 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 6e-39 | 64 | 350 | 15 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 2e-26 | 126 | 292 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 7e-26 | 83 | 292 | 23 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 7e-21 | 111 | 293 | 46 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| DY275282 | 331 | 56 | 384 | 0 |
| DY289690 | 305 | 57 | 357 | 0 |
| DY800627 | 267 | 1 | 267 | 0 |
| DY277275 | 310 | 58 | 367 | 0 |
| DY277275 | 26 | 359 | 384 | 0.034 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
