| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.016G095900.5 |
| Family | GT30 |
| Protein Properties | Length: 324 Molecular Weight: 36289.6 Isoelectric Point: 9.9457 |
| Chromosome | Chromosome/Scaffold: 16 Start: 9156958 End: 9163101 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GT30 | 1 | 99 | 1.6e-27 |
| MDAFLDYWNPNAIMLLESELWPNLIMASSRKGILLALLNARVSMKSFKLWSSPVLFPLISLLLSKFSLIIPLSSMQAIHFQLLQAPPFIINFAGDLKYV | |||
| Full Sequence |
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| Protein Sequence Length: 324 Download |
| MDAFLDYWNP NAIMLLESEL WPNLIMASSR KGILLALLNA RVSMKSFKLW SSPVLFPLIS 60 LLLSKFSLII PLSSMQAIHF QLLQAPPFII NFAGDLKYVV EYDASKEEFR SIDDLKVQLG 120 HRKVWMASSI HRGEEEVMLG VHKVLKQVYP DLVTIIVPRY PQHGKDIAQK LQKEGQHVAL 180 RSQHQRIVPG RNIYVVDTLG ELRHLYRLTP IAVIGGSFFP GLAGHNISEA AAAGCAVLTG 240 YHVGHFSHML REMQRLNPLS VLQVAGKLEL EEAILKFFSD GKVLEARQTA SKQAFHALSN 300 GIIANAWNVL YFHVLKQALL KGR* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04413 | Glycos_transf_N | 4.0e-13 | 1 | 50 | 50 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. | ||
| COG1519 | KdtA | 5.0e-59 | 4 | 314 | 312 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | ||
| PRK05749 | PRK05749 | 6.0e-60 | 1 | 297 | 298 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABE80128.2 | 0 | 1 | 295 | 120 | 415 | Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal [Medicago truncatula] |
| EMBL | CBI30224.1 | 0 | 1 | 263 | 122 | 385 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277784.1 | 0 | 1 | 319 | 122 | 440 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322900.1 | 0 | 1 | 323 | 124 | 446 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528642.1 | 0 | 1 | 321 | 126 | 446 | 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 0.00000000000001 | 4 | 256 | 106 | 320 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| PDB | 2xcu_C | 0.00000000000001 | 4 | 256 | 106 | 320 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| PDB | 2xcu_B | 0.00000000000001 | 4 | 256 | 106 | 320 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| PDB | 2xcu_A | 0.00000000000001 | 4 | 256 | 106 | 320 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| PDB | 2xci_D | 0.00000000000001 | 4 | 256 | 106 | 320 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| KDO transfer to lipid IVA I | KDOTRANS-RXN | EC-2.4.99.12 | lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| KDO transfer to lipid IVA I | KDOTRANS2-RXN | EC-2.4.99.13 | (KDO)-lipid IVA 3-deoxy-D-manno-octulosonic acid transferase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| CD575652 | 220 | 101 | 320 | 0 |
| CX051432 | 202 | 119 | 320 | 0 |
| EE566308 | 257 | 1 | 255 | 0 |
| FE840696 | 227 | 76 | 302 | 0 |
| DY279419 | 302 | 1 | 301 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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