Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.017G004500.1 |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 41190.7 Isoelectric Point: 8.4831 |
Chromosome | Chromosome/Scaffold: 17 Start: 286778 End: 288309 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 383 | 0 |
AWAQACASAQPATISVPKGSFSLGQVRFQGPCKNRAILVRIDGTLVAPSDYKVIGNAKNWLMFEHVNGVTVSGGTLDGQGAGLWSCKNSGKGCPRGATSL EFSNSNNIAITGLASLNSQLFHIVIHGCQNVKVQGVKVSAAGNSPNTDGIHVQSSTGVTILNSRIGTGDDCVSIGPGTSSLWIENVACGPGHGISIGSLG KESQEAGVQNVTVKTSTFTGTENGLRIKSWGRPSNGFARDILFQHAVMNNVQNPIVIDQNYCPGEKNCPGQVSGVKISDVTYQDIHGSSATEVAVKFDCS KKYPCTGIKLEDVKLTYKNQPAEASCSNAG |
Full Sequence |
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Protein Sequence Length: 397 Download |
MAGLPLPLIA HPNTLFVIIF FAFSPLAKAA QYSVLSYGAK PDGKTDATKA FAAAWAQACA 60 SAQPATISVP KGSFSLGQVR FQGPCKNRAI LVRIDGTLVA PSDYKVIGNA KNWLMFEHVN 120 GVTVSGGTLD GQGAGLWSCK NSGKGCPRGA TSLEFSNSNN IAITGLASLN SQLFHIVIHG 180 CQNVKVQGVK VSAAGNSPNT DGIHVQSSTG VTILNSRIGT GDDCVSIGPG TSSLWIENVA 240 CGPGHGISIG SLGKESQEAG VQNVTVKTST FTGTENGLRI KSWGRPSNGF ARDILFQHAV 300 MNNVQNPIVI DQNYCPGEKN CPGQVSGVKI SDVTYQDIHG SSATEVAVKF DCSKKYPCTG 360 IKLEDVKLTY KNQPAEASCS NAGGVASGLV QPTSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 4.0e-91 | 34 | 396 | 371 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-91 | 8 | 392 | 395 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-97 | 66 | 382 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-105 | 32 | 395 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 4.0e-137 | 15 | 396 | 383 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002310385.1 | 0 | 1 | 396 | 1 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331615.1 | 0 | 1 | 396 | 1 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331621.1 | 0 | 1 | 396 | 1 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331627.1 | 0 | 1 | 396 | 1 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331630.1 | 0 | 1 | 396 | 1 | 396 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 127 | 369 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 4e-19 | 117 | 379 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 4e-19 | 117 | 379 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 2e-16 | 125 | 379 | 80 | 339 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_A | 2e-16 | 125 | 379 | 80 | 339 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |