| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.017G004700.1 |
| Family | GH28 |
| Protein Properties | Length: 415 Molecular Weight: 43710.8 Isoelectric Point: 8.5962 |
| Chromosome | Chromosome/Scaffold: 17 Start: 298036 End: 299573 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 54 | 401 | 0 |
| AWAQACASTQPATISVPKGSFSLGQVRFQGPCKNRAILVRIDGTLVAPSDYKVIGNAKNWLMFEHVNGVTVSGGTLDGQGAGLWSCKNSGKGCPPQRRND RYIFKVLIFLVNLFTVQSLEFSNSNNIAITGLASLNSQLFHIVINGCQNVKVQGVKVSAAGNSPNTDGIHVQSSTGVTILNSRIGTGDDCVSIGPGTSSL WIESVACGPGHGISIGSLGKESQEAGVQNVTVMTTTFTGTENGLRIKSWGRPSNRLLEISFQHAVMNNVQNPIVIDQNYCPGEKNCPGQVSGVKISDVTY QDIHGSSATEVAVKFDCSKKYPCTGIKLEDVKLTYKNQPAEASCSNAG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 415 Download |
| MAGLPLPMIP HHITLFFIIF FAFSPLAKAA QHSVLSYGAK PDGKTDSSKA FAAAWAQACA 60 STQPATISVP KGSFSLGQVR FQGPCKNRAI LVRIDGTLVA PSDYKVIGNA KNWLMFEHVN 120 GVTVSGGTLD GQGAGLWSCK NSGKGCPPQR RNDRYIFKVL IFLVNLFTVQ SLEFSNSNNI 180 AITGLASLNS QLFHIVINGC QNVKVQGVKV SAAGNSPNTD GIHVQSSTGV TILNSRIGTG 240 DDCVSIGPGT SSLWIESVAC GPGHGISIGS LGKESQEAGV QNVTVMTTTF TGTENGLRIK 300 SWGRPSNRLL EISFQHAVMN NVQNPIVIDQ NYCPGEKNCP GQVSGVKISD VTYQDIHGSS 360 ATEVAVKFDC SKKYPCTGIK LEDVKLTYKN QPAEASCSNA GGVASGLVQP TSCL* 420 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02218 | PLN02218 | 3.0e-81 | 33 | 410 | 388 | + polygalacturonase ADPG |
| PLN02793 | PLN02793 | 2.0e-82 | 34 | 414 | 392 | + Probable polygalacturonase |
| pfam00295 | Glyco_hydro_28 | 2.0e-89 | 66 | 400 | 341 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
| PLN02188 | PLN02188 | 1.0e-96 | 15 | 413 | 415 | + polygalacturonase/glycoside hydrolase family protein |
| PLN02155 | PLN02155 | 9.0e-126 | 15 | 414 | 402 | + polygalacturonase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002310385.1 | 0 | 1 | 414 | 1 | 397 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331615.1 | 0 | 1 | 414 | 1 | 396 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331621.1 | 0 | 1 | 414 | 1 | 396 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331627.1 | 0 | 1 | 414 | 1 | 396 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331630.1 | 0 | 1 | 414 | 1 | 396 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-20 | 172 | 387 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1czf_B | 3e-18 | 117 | 397 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 3e-18 | 117 | 397 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 2iq7_G | 2e-16 | 118 | 399 | 71 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-16 | 118 | 399 | 71 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
