Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.017G005600.1 |
Family | GH28 |
Protein Properties | Length: 390 Molecular Weight: 40563.8 Isoelectric Point: 8.249 |
Chromosome | Chromosome/Scaffold: 17 Start: 348097 End: 349650 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 47 | 376 | 0 |
AWAQACASTQPATISVPKGSFSLGQVRFQGPCNNRAILVRIDGTLVAPSDYKVIGNAKNWLIFEHVNGVTVSGGTLDGQGAGLWSCKNSGKGCPRGATSL EFSNSNNIAITGLASLNSQLFHIVINGCQNVKVQGVKVSAAGNSPNTDGIHVQSSTGVTILNSRIGTGDDCVSIGPGTSSLWIENVACGPGHGISIGSLG KESQEAGVQNVTVKTTTFTGTENGLRIKSWGRPSNGFARDILFQHAVMNNVQNPIVIDQNYCPGEKNCPGQVSGVKISDVTYQDIHGSSATEVAVKFDCS KKYPCTGIKLEDVKLTYKNQPAEASCSNAG |
Full Sequence |
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Protein Sequence Length: 390 Download |
MIPHPITLFF IIFFAFSPLA KAAQFSVLSY GATPDGKTDS TKAFAAAWAQ ACASTQPATI 60 SVPKGSFSLG QVRFQGPCNN RAILVRIDGT LVAPSDYKVI GNAKNWLIFE HVNGVTVSGG 120 TLDGQGAGLW SCKNSGKGCP RGATSLEFSN SNNIAITGLA SLNSQLFHIV INGCQNVKVQ 180 GVKVSAAGNS PNTDGIHVQS STGVTILNSR IGTGDDCVSI GPGTSSLWIE NVACGPGHGI 240 SIGSLGKESQ EAGVQNVTVK TTTFTGTENG LRIKSWGRPS NGFARDILFQ HAVMNNVQNP 300 IVIDQNYCPG EKNCPGQVSG VKISDVTYQD IHGSSATEVA VKFDCSKKYP CTGIKLEDVK 360 LTYKNQPAEA SCSNAGGVAS GLVQPTSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-86 | 11 | 385 | 385 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-87 | 25 | 389 | 373 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-91 | 59 | 375 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-100 | 25 | 388 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-131 | 8 | 389 | 383 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309716.1 | 0 | 1 | 389 | 3 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331615.1 | 0 | 1 | 389 | 8 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331621.1 | 0 | 1 | 389 | 8 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331627.1 | 0 | 1 | 389 | 8 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331630.1 | 0 | 1 | 389 | 8 | 396 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 120 | 362 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 2e-18 | 110 | 372 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 2e-18 | 110 | 372 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 2iq7_G | 1e-16 | 111 | 374 | 71 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-16 | 111 | 374 | 71 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |