Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.017G005800.1 |
Family | GH28 |
Protein Properties | Length: 390 Molecular Weight: 40438.8 Isoelectric Point: 8.3676 |
Chromosome | Chromosome/Scaffold: 17 Start: 362046 End: 363871 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 46 | 376 | 0 |
AWSQACASTGPATISVPKGSFSLRQVKFQGPCKNNAILVRIDGTLVAPSNYGVLGSAENFLIFEHVNGVTLSGGTLDGQGAGLWSCKNSGKGNCPRGATS LEFSNSKNIAITGLASLNSQMFHIVINGCQNVKLQGVKVSADGNSPNTDGIHVQLSTAVTILNSRIGTGDDCISIGPGTSNLWIENVACGPGHGISIGSL GKDSQEAGVRDVTVKTTTFTGTENGLRIKTWGRPSNGFATNILFQHVVMNNVKNPILIDQNYCPGNKNCPGQASGVKISDVTYQDIHGTSATELAVKFDC SRKYPCTGIKLEDVKLTYDNKPAEASCSNAG |
Full Sequence |
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Protein Sequence Length: 390 Download |
MSPLLLTLLS IIFLASPSAK AAQFSVLSYG AKPDGKTDST KAFAAAWSQA CASTGPATIS 60 VPKGSFSLRQ VKFQGPCKNN AILVRIDGTL VAPSNYGVLG SAENFLIFEH VNGVTLSGGT 120 LDGQGAGLWS CKNSGKGNCP RGATSLEFSN SKNIAITGLA SLNSQMFHIV INGCQNVKLQ 180 GVKVSADGNS PNTDGIHVQL STAVTILNSR IGTGDDCISI GPGTSNLWIE NVACGPGHGI 240 SIGSLGKDSQ EAGVRDVTVK TTTFTGTENG LRIKTWGRPS NGFATNILFQ HVVMNNVKNP 300 ILIDQNYCPG NKNCPGQASG VKISDVTYQD IHGTSATELA VKFDCSRKYP CTGIKLEDVK 360 LTYDNKPAEA SCSNAGGVAS GMVQPTSCL* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 7.0e-89 | 25 | 385 | 367 | + polygalacturonase ADPG |
pfam00295 | Glyco_hydro_28 | 8.0e-92 | 53 | 375 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02793 | PLN02793 | 2.0e-92 | 24 | 389 | 373 | + Probable polygalacturonase |
PLN02188 | PLN02188 | 5.0e-100 | 24 | 388 | 371 | + polygalacturonase/glycoside hydrolase family protein |
PLN02155 | PLN02155 | 2.0e-128 | 11 | 389 | 380 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309716.1 | 0 | 3 | 389 | 5 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002310385.1 | 0 | 3 | 389 | 11 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331621.1 | 0 | 7 | 389 | 14 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331659.1 | 0 | 1 | 389 | 1 | 389 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331662.1 | 0 | 1 | 389 | 1 | 389 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-22 | 119 | 364 | 117 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-17 | 14 | 369 | 9 | 346 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1czf_B | 5e-17 | 109 | 380 | 95 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 5e-17 | 109 | 380 | 95 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 0.000000000000001 | 117 | 334 | 80 | 294 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |