y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.017G006200.1 |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 41255.9 Isoelectric Point: 8.7103 |
Chromosome | Chromosome/Scaffold: 17 Start: 403125 End: 404971 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 383 | 0 |
AWSQACASTGPATISVPKGSFSLRQVKFQGPCKNNAILVRIDGTLVAPSNYGVLGSAENWLIFEHVNGVTLSGGTLDGQGAGLWSCKNSGKGNCPRGATS LEFSNSKNIAITGLASLNSQMFHIVINGCQNVKLQGVKVSADGNSPNTDGIHVQLSTAVTILNSRIGTGDDCISIGPGTSNLWIENVACGPGHGISIGSL GKESQEAGVRDVTVKTTTFTGTENGLRIKTWGRPSNGFATNILFQHVVMNNVKNPILIDQNYCPGKKNCPGQASGVKISDVTYQDIHGTSATELAVKFDC SRKYPCTGIKLQDVKLTYENKPAEASCSNAG |
Full Sequence |
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Protein Sequence Length: 397 Download |
MASLRLPMSP LLLTLLSIIF LASPSAKAAQ FSVLSYGAKP DGKTDSTKAF AAAWSQACAS 60 TGPATISVPK GSFSLRQVKF QGPCKNNAIL VRIDGTLVAP SNYGVLGSAE NWLIFEHVNG 120 VTLSGGTLDG QGAGLWSCKN SGKGNCPRGA TSLEFSNSKN IAITGLASLN SQMFHIVING 180 CQNVKLQGVK VSADGNSPNT DGIHVQLSTA VTILNSRIGT GDDCISIGPG TSNLWIENVA 240 CGPGHGISIG SLGKESQEAG VRDVTVKTTT FTGTENGLRI KTWGRPSNGF ATNILFQHVV 300 MNNVKNPILI DQNYCPGKKN CPGQASGVKI SDVTYQDIHG TSATELAVKF DCSRKYPCTG 360 IKLQDVKLTY ENKPAEASCS NAGGVASGVV QPTSCL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-89 | 32 | 392 | 367 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-91 | 60 | 382 | 324 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-93 | 31 | 396 | 373 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-102 | 31 | 395 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-130 | 31 | 396 | 367 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309716.1 | 0 | 6 | 396 | 1 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002310385.1 | 0 | 1 | 396 | 1 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331621.1 | 0 | 1 | 396 | 1 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331659.1 | 0 | 8 | 396 | 1 | 389 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331662.1 | 0 | 8 | 396 | 1 | 389 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-22 | 126 | 371 | 117 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 1e-17 | 116 | 379 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 1e-17 | 116 | 379 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1rmg_A | 3e-16 | 21 | 376 | 9 | 346 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 5e-16 | 124 | 341 | 80 | 294 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |