| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.017G006300.1 |
| Family | GH28 |
| Protein Properties | Length: 259 Molecular Weight: 28404.5 Isoelectric Point: 8.4726 |
| Chromosome | Chromosome/Scaffold: 17 Start: 423678 End: 425034 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 74 | 230 | 1.4e-34 |
| FHIVINGCQNINMQGVTLSASRKSPDTDGIHVQLSTGVTILNTKNKNTRKFLSIGVDTTNLSIENVACGPVMNKDLEESGVQNEMVKNVTLAGSQNGLRI KSWGRPSNGFAKDILSQHIAMNNVQNPIVIYQNYCHENKDCPGQVTSVLNDLRITVI | |||
| Full Sequence |
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| Protein Sequence Length: 259 Download |
| MNGLIEYYCY RILLCDGVCR RQQFTKVKNC TSFYNESMVL RAASATASAG SSGSVAVIWI 60 YQIKKYGDHG IKIFHIVING CQNINMQGVT LSASRKSPDT DGIHVQLSTG VTILNTKNKN 120 TRKFLSIGVD TTNLSIENVA CGPVMNKDLE ESGVQNEMVK NVTLAGSQNG LRIKSWGRPS 180 NGFAKDILSQ HIAMNNVQNP IVIYQNYCHE NKDCPGQVTS VLNDLRITVI PLEDVKLTYR 240 NGPADDIVIH FTGCLPSL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 6.0e-19 | 75 | 207 | 140 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 6.0e-25 | 75 | 221 | 154 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 4.0e-27 | 72 | 208 | 145 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-28 | 72 | 237 | 179 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02155 | PLN02155 | 3.0e-40 | 72 | 253 | 214 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAP21999.1 | 0 | 72 | 253 | 140 | 352 | endopolygalacturonase [Prunus persica] |
| GenBank | ABD33834.1 | 0 | 72 | 253 | 169 | 381 | polygalacturonase [Prunus domestica subsp. insititia] |
| RefSeq | XP_002331621.1 | 0 | 72 | 245 | 172 | 376 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331631.1 | 0 | 1 | 258 | 17 | 274 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529090.1 | 0 | 72 | 245 | 169 | 373 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.00007 | 74 | 213 | 175 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EE255801 | 205 | 72 | 245 | 0 |
| FC861099 | 210 | 72 | 250 | 0 |
| DW353868 | 208 | 74 | 250 | 0 |
| CO903590 | 210 | 72 | 250 | 0 |
| DW359075 | 204 | 73 | 245 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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