Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.017G006500.1 |
Family | GH28 |
Protein Properties | Length: 391 Molecular Weight: 41666.3 Isoelectric Point: 8.9216 |
Chromosome | Chromosome/Scaffold: 17 Start: 438046 End: 439808 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 377 | 0 |
WSAACSSASPSTIYVPKGSYLLKATVFSGPCKNKITVQIDGTLVAPTDYRALGNSGYWILFIKVNRVSVFGGTLDAKGAGFWACRKSGQNCPVGARSITF NWANDILISGLTSINSQSMHIVINSCNNVLVRNVRVIAPYNSPNTDGIHVQISTGVTITGSTLQTGDDCISIGPSTRNLLMSSIKCGPGHGISIGSLSKD FNEDGVENITLTNSIFSGSDNGVRIKSWARPSNGFVRNVVFQNLIMKNVKNPIIIDQNYCPNNQGCPHQSSGVQISQVTYRNIQGTSATPKAVTFDCSPS NPCRGIELQDIKLTYLNTAATSSCKNIG |
Full Sequence |
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Protein Sequence Length: 391 Download |
MAKFVVSYVV LFLFYNFQRS NAASASYNVS QFGANPDGIT DSTQPFLKAW SAACSSASPS 60 TIYVPKGSYL LKATVFSGPC KNKITVQIDG TLVAPTDYRA LGNSGYWILF IKVNRVSVFG 120 GTLDAKGAGF WACRKSGQNC PVGARSITFN WANDILISGL TSINSQSMHI VINSCNNVLV 180 RNVRVIAPYN SPNTDGIHVQ ISTGVTITGS TLQTGDDCIS IGPSTRNLLM SSIKCGPGHG 240 ISIGSLSKDF NEDGVENITL TNSIFSGSDN GVRIKSWARP SNGFVRNVVF QNLIMKNVKN 300 PIIIDQNYCP NNQGCPHQSS GVQISQVTYR NIQGTSATPK AVTFDCSPSN PCRGIELQDI 360 KLTYLNTAAT SSCKNIGGTS SGVLMPESCI * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-87 | 23 | 387 | 372 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-88 | 61 | 376 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-95 | 29 | 389 | 370 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-95 | 22 | 389 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 7.0e-173 | 20 | 390 | 372 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 1 | 390 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331633.1 | 0 | 1 | 390 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 390 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529097.1 | 0 | 3 | 390 | 4 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 6 | 390 | 5 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-20 | 120 | 363 | 124 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 6e-17 | 20 | 362 | 14 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 1e-16 | 52 | 376 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-16 | 52 | 376 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-16 | 52 | 376 | 16 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |