| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.017G040800.1 |
| Family | GH14 |
| Protein Properties | Length: 520 Molecular Weight: 58992.8 Isoelectric Point: 5.1921 |
| Chromosome | Chromosome/Scaffold: 17 Start: 3340197 End: 3343268 |
| Description | beta-amylase 5 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 19 | 438 | 0 |
| YVMLPLRVVTADNVFEGGEKLEKQLKDLRAAGIDGVMVDVWWGIIEAKGPKQYEWSAYRSLFELVNKCDLKIQAIMSFHQCGGNVGDVVYIPIPQWVRDI GETDPDIFYTNRSGNRNEEYLSLGVDHQPLFGGRTAIEMYSDYMKSFRENMADFLEAGQIIDIEVGCGAAGELRYPSYPETQGWVFPGIGEFQCYDKYLK AEFKEAAKNAGHPEWELPDDAGTYNDKPDSTEFFKQNGTYLTEKGKFFLTWYSNKLLMHGDDILDEANKAFVGCKVKLAAKVSGLHWWYKHHSHAAELTA GYYNLKDRDGYRPAARILSRHHAIMNFTCLEMRDSEQSAEAKSGPQELVQQVLSGAWREKIEVAGENALSRYDAEAYNQILLNARPNGVNKWGPPKLRMF GVTYLRLYDELFEENNFNLF | |||
| Full Sequence |
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| Protein Sequence Length: 520 Download |
| MQGGSKYDEK LLQNYVPLYV MLPLRVVTAD NVFEGGEKLE KQLKDLRAAG IDGVMVDVWW 60 GIIEAKGPKQ YEWSAYRSLF ELVNKCDLKI QAIMSFHQCG GNVGDVVYIP IPQWVRDIGE 120 TDPDIFYTNR SGNRNEEYLS LGVDHQPLFG GRTAIEMYSD YMKSFRENMA DFLEAGQIID 180 IEVGCGAAGE LRYPSYPETQ GWVFPGIGEF QCYDKYLKAE FKEAAKNAGH PEWELPDDAG 240 TYNDKPDSTE FFKQNGTYLT EKGKFFLTWY SNKLLMHGDD ILDEANKAFV GCKVKLAAKV 300 SGLHWWYKHH SHAAELTAGY YNLKDRDGYR PAARILSRHH AIMNFTCLEM RDSEQSAEAK 360 SGPQELVQQV LSGAWREKIE VAGENALSRY DAEAYNQILL NARPNGVNKW GPPKLRMFGV 420 TYLRLYDELF EENNFNLFKT FVRKMHADQD YCPDPSKYGH EIGPLERSNP PIPVDDIIDA 480 TTPMKPFPWN KQTDMPVDGA GQFGLLGGLI NGIKSIFFK* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02705 | PLN02705 | 3.0e-129 | 15 | 404 | 393 | + beta-amylase | ||
| PLN02905 | PLN02905 | 7.0e-155 | 15 | 448 | 438 | + beta-amylase | ||
| PLN00197 | PLN00197 | 4.0e-158 | 3 | 450 | 452 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 2.0e-176 | 16 | 445 | 433 | + beta-amylase | ||
| PLN02801 | PLN02801 | 0 | 1 | 518 | 518 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK30294.1 | 0 | 1 | 517 | 1 | 513 | AF353207_1 beta-amylase [Castanea crenata] |
| EMBL | CAN70833.1 | 0 | 8 | 517 | 10 | 519 | hypothetical protein [Vitis vinifera] |
| Swiss-Prot | O64407 | 0 | 5 | 499 | 2 | 496 | AMYB_VIGUN RecName: Full=Beta-amylase; AltName: Full=1,4-alpha-D-glucan maltohydrolase |
| RefSeq | XP_002327920.1 | 0 | 1 | 519 | 1 | 519 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515712.1 | 0 | 1 | 519 | 1 | 518 | Beta-amylase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ukp_D | 0 | 8 | 499 | 4 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_C | 0 | 8 | 499 | 4 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_B | 0 | 8 | 499 | 4 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_A | 0 | 8 | 499 | 4 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_D | 0 | 8 | 499 | 4 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777976 | 494 | 7 | 499 | 0 |
| HO803971 | 396 | 94 | 489 | 0 |
| CV281021 | 283 | 236 | 518 | 0 |
| HO782669 | 385 | 111 | 495 | 0 |
| CN519790 | 258 | 107 | 364 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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