| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.017G040800.2 |
| Family | GH14 |
| Protein Properties | Length: 466 Molecular Weight: 52999.8 Isoelectric Point: 5.2447 |
| Chromosome | Chromosome/Scaffold: 17 Start: 3340332 End: 3343123 |
| Description | beta-amylase 5 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 1 | 384 | 0 |
| MVDVWWGIIEAKGPKQYEWSAYRSLFELVNKCDLKIQAIMSFHQCGGNVGDVVYIPIPQWVRDIGETDPDIFYTNRSGNRNEEYLSLGVDHQPLFGGRTA IEMYSDYMKSFRENMADFLEAGQIIDIEVGCGAAGELRYPSYPETQGWVFPGIGEFQCYDKYLKAEFKEAAKNAGHPEWELPDDAGTYNDKPDSTEFFKQ NGTYLTEKGKFFLTWYSNKLLMHGDDILDEANKAFVGCKVKLAAKVSGLHWWYKHHSHAAELTAGYYNLKDRDGYRPAARILSRHHAIMNFTCLEMRDSE QSAEAKSGPQELVQQVLSGAWREKIEVAGENALSRYDAEAYNQILLNARPNGVNKWGPPKLRMFGVTYLRLYDELFEENNFNLF | |||
| Full Sequence |
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| Protein Sequence Length: 466 Download |
| MVDVWWGIIE AKGPKQYEWS AYRSLFELVN KCDLKIQAIM SFHQCGGNVG DVVYIPIPQW 60 VRDIGETDPD IFYTNRSGNR NEEYLSLGVD HQPLFGGRTA IEMYSDYMKS FRENMADFLE 120 AGQIIDIEVG CGAAGELRYP SYPETQGWVF PGIGEFQCYD KYLKAEFKEA AKNAGHPEWE 180 LPDDAGTYND KPDSTEFFKQ NGTYLTEKGK FFLTWYSNKL LMHGDDILDE ANKAFVGCKV 240 KLAAKVSGLH WWYKHHSHAA ELTAGYYNLK DRDGYRPAAR ILSRHHAIMN FTCLEMRDSE 300 QSAEAKSGPQ ELVQQVLSGA WREKIEVAGE NALSRYDAEA YNQILLNARP NGVNKWGPPK 360 LRMFGVTYLR LYDELFEENN FNLFKTFVRK MHADQDYCPD PSKYGHEIGP LERSNPPIPV 420 DDIIDATTPM KPFPWNKQTD MPVDGAGQFG LLGGLINGIK SIFFK* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02705 | PLN02705 | 1.0e-120 | 1 | 350 | 353 | + beta-amylase | ||
| PLN02905 | PLN02905 | 2.0e-142 | 1 | 394 | 398 | + beta-amylase | ||
| PLN00197 | PLN00197 | 8.0e-146 | 1 | 396 | 400 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 3.0e-165 | 1 | 391 | 394 | + beta-amylase | ||
| PLN02801 | PLN02801 | 0 | 1 | 464 | 464 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK30294.1 | 0 | 1 | 463 | 56 | 513 | AF353207_1 beta-amylase [Castanea crenata] |
| EMBL | CAN70833.1 | 0 | 1 | 463 | 57 | 519 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002281003.1 | 0 | 1 | 463 | 57 | 519 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002327920.1 | 0 | 1 | 465 | 55 | 519 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515712.1 | 0 | 1 | 465 | 55 | 518 | Beta-amylase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1uko_D | 0 | 1 | 445 | 51 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_C | 0 | 1 | 445 | 51 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_B | 0 | 1 | 445 | 51 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_A | 0 | 1 | 445 | 51 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_D | 0 | 1 | 445 | 51 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777976 | 445 | 1 | 445 | 0 |
| HO803971 | 396 | 40 | 435 | 0 |
| CV281021 | 283 | 182 | 464 | 0 |
| HO782669 | 385 | 57 | 441 | 0 |
| CN519790 | 258 | 53 | 310 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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