| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.017G040800.5 |
| Family | GH14 |
| Protein Properties | Length: 335 Molecular Weight: 38018.4 Isoelectric Point: 4.931 |
| Chromosome | Chromosome/Scaffold: 17 Start: 3340332 End: 3343123 |
| Description | beta-amylase 5 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 19 | 302 | 0 |
| YVMLPLRVVTADNVFEGGEKLEKQLKDLRAAGIDGVMVDVWWGIIEAKGPKQYEWSAYRSLFELVNKCDLKIQAIMSFHQCGGNVGDVVYIPIPQWVRDI GETDPDIFYTNRSGNRNEEYLSLGVDHQPLFGGRTAIEMYSDYMKSFRENMADFLEAGQIIDIEVGCGAAGELRYPSYPETQGWVFPGIGEFQCYDKYLK AEFKEAAKNAGHPEWELPDDAGTYNDKPDSTEFFKQNGTYLTEKGKFFLTWYSNKLLMHGDDILDEANKAFVGCKVKLAAKVYF | |||
| Full Sequence |
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| Protein Sequence Length: 335 Download |
| MQGGSKYDEK LLQNYVPLYV MLPLRVVTAD NVFEGGEKLE KQLKDLRAAG IDGVMVDVWW 60 GIIEAKGPKQ YEWSAYRSLF ELVNKCDLKI QAIMSFHQCG GNVGDVVYIP IPQWVRDIGE 120 TDPDIFYTNR SGNRNEEYLS LGVDHQPLFG GRTAIEMYSD YMKSFRENMA DFLEAGQIID 180 IEVGCGAAGE LRYPSYPETQ GWVFPGIGEF QCYDKYLKAE FKEAAKNAGH PEWELPDDAG 240 TYNDKPDSTE FFKQNGTYLT EKGKFFLTWY SNKLLMHGDD ILDEANKAFV GCKVKLAAKV 300 YFVTLFLFLT NEGRKRIIKP HSIFKTGIWT ALVV* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02705 | PLN02705 | 1.0e-97 | 15 | 302 | 291 | + beta-amylase | ||
| PLN00197 | PLN00197 | 5.0e-106 | 3 | 300 | 302 | + beta-amylase; Provisional | ||
| PLN02905 | PLN02905 | 3.0e-110 | 15 | 300 | 287 | + beta-amylase | ||
| PLN02803 | PLN02803 | 5.0e-120 | 16 | 300 | 288 | + beta-amylase | ||
| PLN02801 | PLN02801 | 0 | 1 | 300 | 300 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY40266.1 | 0 | 8 | 300 | 5 | 297 | beta-amylase [Glycine max] |
| DDBJ | BAA09462.1 | 0 | 8 | 300 | 5 | 297 | beta-amylase [Glycine max] |
| DDBJ | BAD93291.1 | 0 | 8 | 300 | 5 | 297 | beta-amylase [Glycine max] |
| RefSeq | XP_002327920.1 | 0 | 1 | 300 | 1 | 300 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515712.1 | 0 | 1 | 300 | 1 | 300 | Beta-amylase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1v3i_A | 0 | 8 | 300 | 4 | 296 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1q6g_A | 0 | 8 | 300 | 4 | 296 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
| PDB | 1uko_D | 0 | 8 | 300 | 4 | 296 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_C | 0 | 8 | 300 | 4 | 296 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_B | 0 | 8 | 300 | 4 | 296 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EL686744 | 286 | 15 | 300 | 0 |
| DW015107 | 293 | 8 | 300 | 0 |
| BI308271 | 275 | 14 | 288 | 0 |
| DY261326 | 291 | 7 | 291 | 0 |
| DT502468 | 218 | 1 | 218 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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