| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.017G054700.1 |
| Family | CE8 |
| Protein Properties | Length: 312 Molecular Weight: 34906.3 Isoelectric Point: 7.4974 |
| Chromosome | Chromosome/Scaffold: 17 Start: 4845385 End: 4847629 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 24 | 301 | 0 |
| LIDKSGHGNFSSIQSAIDSMPSDNKNWVCIHVRAGTYREKVKIPYNKPYIILRGEGKRRTKIVWDDHFSTAQSPTFVSLADNIVVRSITFVNSYNFPHDN NPRLPAVAAMITGDKTAFYQCGFAGVQDTLWDEAGRHYFKRCTIQGAVDFIFGSGQSIYEGCSIQVLEGGFITAQGRTNPSDANGFVFKGCNVFGKSSVY LGRPWRGYSRVLFYKSNFSNIVDPEGWNAWNFVGHENHITFAEYGNFGPGAEISKRVSWANKLSPQSLEELTSMSFIN | |||
| Full Sequence |
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| Protein Sequence Length: 312 Download |
| MEFPVLGCSS HFLLECQGEE RTLLIDKSGH GNFSSIQSAI DSMPSDNKNW VCIHVRAGTY 60 REKVKIPYNK PYIILRGEGK RRTKIVWDDH FSTAQSPTFV SLADNIVVRS ITFVNSYNFP 120 HDNNPRLPAV AAMITGDKTA FYQCGFAGVQ DTLWDEAGRH YFKRCTIQGA VDFIFGSGQS 180 IYEGCSIQVL EGGFITAQGR TNPSDANGFV FKGCNVFGKS SVYLGRPWRG YSRVLFYKSN 240 FSNIVDPEGW NAWNFVGHEN HITFAEYGNF GPGAEISKRV SWANKLSPQS LEELTSMSFI 300 NAENWIEKQP I* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02682 | PLN02682 | 1.0e-85 | 21 | 306 | 302 | + pectinesterase family protein |
| PLN02432 | PLN02432 | 2.0e-88 | 23 | 306 | 286 | + putative pectinesterase |
| PLN02480 | PLN02480 | 2.0e-92 | 18 | 306 | 296 | + Probable pectinesterase |
| PLN02176 | PLN02176 | 2.0e-108 | 21 | 311 | 300 | + putative pectinesterase |
| PLN02497 | PLN02497 | 0 | 20 | 311 | 301 | + probable pectinesterase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB01354.1 | 0 | 20 | 311 | 31 | 329 | pectin methylesterase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_189055.1 | 0 | 20 | 311 | 31 | 333 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_197400.1 | 0 | 8 | 311 | 17 | 328 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002323773.1 | 0 | 23 | 311 | 1 | 289 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518106.1 | 0 | 22 | 311 | 47 | 336 | Pectinesterase U1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 23 | 307 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 9.00054e-42 | 24 | 307 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 2e-18 | 33 | 228 | 44 | 269 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 2e-16 | 33 | 278 | 18 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 2e-16 | 33 | 278 | 18 | 315 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EE476551 | 241 | 1 | 231 | 0 |
| DV984237 | 289 | 32 | 308 | 0 |
| EV030104 | 227 | 1 | 218 | 0 |
| DK492309 | 229 | 1 | 221 | 0 |
| DK492309 | 42 | 219 | 260 | 0.000003 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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