Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.017G055700.1 |
Family | CBM43 |
Protein Properties | Length: 196 Molecular Weight: 20311 Isoelectric Point: 4.9186 |
Chromosome | Chromosome/Scaffold: 17 Start: 4966909 End: 4970879 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 33 | 114 | 4.1e-35 |
WCVARSDASNQALQTALDYACGSGADCTPLQSNGLCFLPNSIQAHASYAFNSYFQRKGMAPGSCDFSGTATVAKTDPSYGSC |
Full Sequence |
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Protein Sequence Length: 196 Download |
MENLLPNKLF FIFFAIHVLG GAMFLAVVVE GNWCVARSDA SNQALQTALD YACGSGADCT 60 PLQSNGLCFL PNSIQAHASY AFNSYFQRKG MAPGSCDFSG TATVAKTDPS YGSCVYPSSL 120 STAGGAGTTS STTPNTNPNI QSPTFGDGST GLNPGLNPGT PPLLDNSESS LGFVATRTLL 180 PLCLLLVLSF TFRPM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 1.0e-23 | 33 | 103 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-41 | 33 | 116 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU17645.1 | 0 | 27 | 188 | 24 | 188 | unknown [Glycine max] |
RefSeq | NP_193096.5 | 0 | 33 | 154 | 61 | 196 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002267551.1 | 0 | 18 | 195 | 35 | 217 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323780.1 | 0 | 33 | 110 | 1 | 78 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518089.1 | 0 | 9 | 120 | 7 | 114 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 2e-24 | 31 | 118 | 11 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |