| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.017G060300.1 |
| Family | CBM43 |
| Protein Properties | Length: 467 Molecular Weight: 51558.9 Isoelectric Point: 6.8589 |
| Chromosome | Chromosome/Scaffold: 17 Start: 5580786 End: 5582914 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM43 | 377 | 460 | 5.7e-27 |
| WCVATPDVNLTELERALTFACSQGNGTCEALTPGKECYEPLSVIWHASFAFSSYWAKFRSQGANCYFNGLAVQTTSDPSRGLCQ | |||
| GH17 | 27 | 350 | 0 |
| IGVNYGLLGNNLPSAGQSIESLRAMKAGSVKLYDANPEILRLLAGTDIRVSIMVPNYEIINIATNQTSANKWVEDNVLAYHPETMIRTILVGNEVLSYCS DEGKRIWNHLVPAMRRIKISLRAQDIRNIKVGTPLAMDVLQTTFPPSTGTFRPDISTTVMVPLLKFLNSTKSFFFIDVYPYFPWSENPININLDYALFQS NIKYTDPSSGLVYTNLLDQMLDSLVFAMTKLGFHSIRLSIAETGWPNAGDIGETGASIYNAATYNRNLVTKMTGQPLIGTPARPGLFIPAFIFSLYDENQ KTGPGTERHWGLLHPNGTSIYQID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 467 Download |
| MTRKMRGDAL LFFSLLVLSD AMPSGKIGVN YGLLGNNLPS AGQSIESLRA MKAGSVKLYD 60 ANPEILRLLA GTDIRVSIMV PNYEIINIAT NQTSANKWVE DNVLAYHPET MIRTILVGNE 120 VLSYCSDEGK RIWNHLVPAM RRIKISLRAQ DIRNIKVGTP LAMDVLQTTF PPSTGTFRPD 180 ISTTVMVPLL KFLNSTKSFF FIDVYPYFPW SENPININLD YALFQSNIKY TDPSSGLVYT 240 NLLDQMLDSL VFAMTKLGFH SIRLSIAETG WPNAGDIGET GASIYNAATY NRNLVTKMTG 300 QPLIGTPARP GLFIPAFIFS LYDENQKTGP GTERHWGLLH PNGTSIYQID LTGKRASSDY 360 EPLPATHNDM PYEGKSWCVA TPDVNLTELE RALTFACSQG NGTCEALTPG KECYEPLSVI 420 WHASFAFSSY WAKFRSQGAN CYFNGLAVQT TSDPSRGLCQ FPSVTI* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.002 | 266 | 339 | 77 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-16 | 376 | 448 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 6.0e-31 | 376 | 461 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 9.0e-112 | 27 | 350 | 325 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM64490.1 | 0 | 24 | 466 | 34 | 476 | beta-1,3-glucanase, putative [Arabidopsis thaliana] |
| GenBank | ABK28569.1 | 0 | 24 | 466 | 34 | 476 | unknown [Arabidopsis thaliana] |
| EMBL | CBI39470.1 | 0 | 7 | 466 | 8 | 467 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_189019.1 | 0 | 24 | 466 | 34 | 476 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002298669.1 | 0 | 10 | 466 | 2 | 462 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2cyg_A | 0 | 27 | 351 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
| PDB | 1ghs_B | 0 | 27 | 351 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 0 | 27 | 351 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_D | 0 | 26 | 352 | 1 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 3f55_C | 0 | 26 | 352 | 1 | 316 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
