Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.017G078400.1 |
Family | PL1 |
Protein Properties | Length: 453 Molecular Weight: 50852.2 Isoelectric Point: 10.1078 |
Chromosome | Chromosome/Scaffold: 17 Start: 9154690 End: 9156478 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 166 | 371 | 0 |
IQKGPLWIIFSKNMNIRLSKELIMTSHKTIDGRGHHIHIAYGAGITIQFIQNVIIHGIRIHHIVATSGGNIRDSVEHYGIRTNSDGDGISIFGSSNIWID HVSMSRCTDGLIDAIMGSTAITISNSHFTHHNDAILLGASDSFSGDELMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWRMYAIGGSKHPTIISQ GNRFIA |
Full Sequence |
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Protein Sequence Length: 453 Download |
MAVGKAKLIF AITLATLIPG LLADIAFFDE VWQKRAEEAK KVTLNSYIPN PEDATDDFNF 60 EVNNTLVDFD DDRNDAGFEL HANSTRRNLK QGKKKYLGPC KVTNPIDKCW RCRRNWARNR 120 KRLAKCALGF GRRATGGLKG RVYVVTENSD DDVMNPKPGT LRHAVIQKGP LWIIFSKNMN 180 IRLSKELIMT SHKTIDGRGH HIHIAYGAGI TIQFIQNVII HGIRIHHIVA TSGGNIRDSV 240 EHYGIRTNSD GDGISIFGSS NIWIDHVSMS RCTDGLIDAI MGSTAITISN SHFTHHNDAI 300 LLGASDSFSG DELMQVTVAF NHFGQGLVQR MPRCRWGFFH VVNNDYTHWR MYAIGGSKHP 360 TIISQGNRFI APPELHLKQV TKRDYATESE WKTWTWRSEN DLMMNGAFFI ESGKPRTKRP 420 HKKFMITAKP GSLATRMTLF AGALDCKSGR KC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 2.0e-14 | 24 | 89 | 66 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-18 | 135 | 369 | 252 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-48 | 174 | 369 | 204 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-58 | 178 | 373 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 16 | 452 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 16 | 452 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002306040.1 | 0 | 1 | 452 | 1 | 432 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002311599.1 | 0 | 12 | 452 | 3 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323835.1 | 0 | 1 | 452 | 1 | 452 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 104 | 444 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 104 | 444 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.00000000000001 | 135 | 360 | 22 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.0000000000002 | 135 | 369 | 19 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.0000000000005 | 182 | 369 | 120 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |