Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.017G084100.1 |
Family | GT5 |
Protein Properties | Length: 756 Molecular Weight: 84386.4 Isoelectric Point: 6.1058 |
Chromosome | Chromosome/Scaffold: 17 Start: 10121579 End: 10127528 |
Description | starch synthase 2 |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GT5 | 265 | 748 | 0 |
NVIMVAAECAPWSKTGGLGDVAGSLPKALARRGHRVMVVAPRYGNYAEPHDIGVRKRYKVDGQDIEVTFFQTYIDGVDFVFIDSHVFCHIEGNIYGGSRL DILKRMALFCKAAVEVPWHVPCGGICYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMKFTRSILVIHNIAHQGRGPVDDFFHVDLPEHYIDLFKLHDPV GGEHFNIFAAGLKAADRVVTVSHGYSWELKTSEGGWGLHNIIKENDWKFSGIVNGIDTKEWNPLFDVHLTSDGYTNYSLETLHTGKPQCKAALQKELGLP VRPDVPMIGFIGRLDQQKGVDLIAEAVPWMVGQDVQLVMLGTGRQDLEQMLRQFENQHHDKIRGWVGFSVKMAHRITAGSDVLLMPSRFEPCGLNQLYAM MYGTIPVVHAVGGLRDTVQPFDPFNESGLGWTFDGAEANKLIHALGNCLFTYREYKKSWEGLQRRGMTQDLSWDHAAEKYEEVL |
Full Sequence |
---|
Protein Sequence Length: 756 Download |
MSSIGSLPFI IETTKAESPV LLSRKNKNRD KFSFFTCRTK KSHNLAVLNY GFSPKSKPVR 60 ATVEEGASGD ESEDALQASI EKSKKVLAMQ RDLLQQIAER RKIVSSIKSS IIDSEVDEVP 120 SEQSEESSPN QDHTSSSGQG VHEKQNGSIL WKNYIHSTAD EVPETSTLDI SKGYDDDKRE 180 LEQQLPPKKA SSHEDSSKQL RVTGSEKVWS DKLPSFLSNT SEISTTNEKQ ENVNEPILPE 240 INNIENDPAT EDILPPPLAG ANVMNVIMVA AECAPWSKTG GLGDVAGSLP KALARRGHRV 300 MVVAPRYGNY AEPHDIGVRK RYKVDGQDIE VTFFQTYIDG VDFVFIDSHV FCHIEGNIYG 360 GSRLDILKRM ALFCKAAVEV PWHVPCGGIC YGDGNLVFIA NDWHTALLPV YLKAYYRDNG 420 LMKFTRSILV IHNIAHQGRG PVDDFFHVDL PEHYIDLFKL HDPVGGEHFN IFAAGLKAAD 480 RVVTVSHGYS WELKTSEGGW GLHNIIKEND WKFSGIVNGI DTKEWNPLFD VHLTSDGYTN 540 YSLETLHTGK PQCKAALQKE LGLPVRPDVP MIGFIGRLDQ QKGVDLIAEA VPWMVGQDVQ 600 LVMLGTGRQD LEQMLRQFEN QHHDKIRGWV GFSVKMAHRI TAGSDVLLMP SRFEPCGLNQ 660 LYAMMYGTIP VVHAVGGLRD TVQPFDPFNE SGLGWTFDGA EANKLIHALG NCLFTYREYK 720 KSWEGLQRRG MTQDLSWDHA AEKYEEVLVA AKYQW* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 9.0e-87 | 264 | 752 | 517 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 2.0e-134 | 264 | 746 | 503 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 6.0e-168 | 264 | 747 | 495 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 0 | 264 | 751 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 265 | 748 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF13168.1 | 0 | 1 | 755 | 1 | 751 | AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] |
GenBank | ABV25894.1 | 0 | 1 | 755 | 1 | 751 | starch synthase isoform II [Manihot esculenta] |
RefSeq | XP_002278470.1 | 0 | 1 | 755 | 1 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
RefSeq | XP_002324061.1 | 0 | 1 | 755 | 1 | 742 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531856.1 | 0 | 1 | 755 | 1 | 754 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 264 | 749 | 10 | 509 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 3vue_A | 0 | 264 | 749 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 264 | 747 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 264 | 754 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 264 | 754 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
HO777841 | 319 | 438 | 756 | 0 |
HO777841 | 395 | 59 | 445 | 0 |
HO781048 | 395 | 362 | 756 | 0 |
HO445868 | 438 | 319 | 756 | 0 |
HO390058 | 459 | 299 | 756 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|