Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.017G084100.2 |
Family | GT5 |
Protein Properties | Length: 743 Molecular Weight: 82987 Isoelectric Point: 6.299 |
Chromosome | Chromosome/Scaffold: 17 Start: 10121579 End: 10127528 |
Description | starch synthase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 252 | 735 | 0 |
NVIMVAAECAPWSKTGGLGDVAGSLPKALARRGHRVMVVAPRYGNYAEPHDIGVRKRYKVDGQDIEVTFFQTYIDGVDFVFIDSHVFCHIEGNIYGGSRL DILKRMALFCKAAVEVPWHVPCGGICYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMKFTRSILVIHNIAHQGRGPVDDFFHVDLPEHYIDLFKLHDPV GGEHFNIFAAGLKAADRVVTVSHGYSWELKTSEGGWGLHNIIKENDWKFSGIVNGIDTKEWNPLFDVHLTSDGYTNYSLETLHTGKPQCKAALQKELGLP VRPDVPMIGFIGRLDQQKGVDLIAEAVPWMVGQDVQLVMLGTGRQDLEQMLRQFENQHHDKIRGWVGFSVKMAHRITAGSDVLLMPSRFEPCGLNQLYAM MYGTIPVVHAVGGLRDTVQPFDPFNESGLGWTFDGAEANKLIHALGNCLFTYREYKKSWEGLQRRGMTQDLSWDHAAEKYEEVL |
Full Sequence |
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Protein Sequence Length: 743 Download |
MSSIGSLPFI IETTKAESPV LLSRKNKNRD KFSFFTCRTK KSHNLAVLNY GFSPKSKPVR 60 ATVEEGASGD ESEDALQASI EKSKKVLAMQ RDLLQQIAER RKIVSSIKSS IIDSEVDEDH 120 TSSSGQGVHE KQNGSILWKN YIHSTADEVP ETSTLDISKG YDDDKRELEQ QLPPKKASSH 180 EDSSKQLRVT GSEKVWSDKL PSFLSNTSEI STTNEKQENV NEPILPEINN IENDPATEDI 240 LPPPLAGANV MNVIMVAAEC APWSKTGGLG DVAGSLPKAL ARRGHRVMVV APRYGNYAEP 300 HDIGVRKRYK VDGQDIEVTF FQTYIDGVDF VFIDSHVFCH IEGNIYGGSR LDILKRMALF 360 CKAAVEVPWH VPCGGICYGD GNLVFIANDW HTALLPVYLK AYYRDNGLMK FTRSILVIHN 420 IAHQGRGPVD DFFHVDLPEH YIDLFKLHDP VGGEHFNIFA AGLKAADRVV TVSHGYSWEL 480 KTSEGGWGLH NIIKENDWKF SGIVNGIDTK EWNPLFDVHL TSDGYTNYSL ETLHTGKPQC 540 KAALQKELGL PVRPDVPMIG FIGRLDQQKG VDLIAEAVPW MVGQDVQLVM LGTGRQDLEQ 600 MLRQFENQHH DKIRGWVGFS VKMAHRITAG SDVLLMPSRF EPCGLNQLYA MMYGTIPVVH 660 AVGGLRDTVQ PFDPFNESGL GWTFDGAEAN KLIHALGNCL FTYREYKKSW EGLQRRGMTQ 720 DLSWDHAAEK YEEVLVAAKY QW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 9.0e-87 | 251 | 739 | 517 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 2.0e-134 | 251 | 733 | 503 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 5.0e-168 | 251 | 734 | 495 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 0 | 251 | 738 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 252 | 735 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF13168.1 | 0 | 1 | 742 | 1 | 751 | AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] |
GenBank | ABV25894.1 | 0 | 1 | 742 | 1 | 751 | starch synthase isoform II [Manihot esculenta] |
RefSeq | XP_002278470.1 | 0 | 1 | 742 | 1 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
RefSeq | XP_002324061.1 | 0 | 1 | 742 | 1 | 742 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531856.1 | 0 | 1 | 742 | 1 | 754 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 251 | 736 | 10 | 509 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3vue_A | 0 | 251 | 736 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 251 | 734 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 251 | 741 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 251 | 741 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777841 | 319 | 425 | 743 | 0 |
HO777841 | 395 | 59 | 432 | 0 |
HO781048 | 395 | 349 | 743 | 0 |
HO445868 | 438 | 306 | 743 | 0 |
HO390058 | 459 | 286 | 743 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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