Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.017G145900.1 |
Family | GH28 |
Protein Properties | Length: 453 Molecular Weight: 49259.9 Isoelectric Point: 5.8454 |
Chromosome | Chromosome/Scaffold: 17 Start: 15344810 End: 15347009 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 61 | 411 | 0 |
YASDGGAQLIVPPGKWLTGSFNLSSHFTLFLHKDAVLLASQDEAEWPAFPPLPSYGVGRDEHAGRFSSLIFGTHLTDVVVTGNNGTIDGQGAVWWDKFHQ KKLKLTRPYLIEFLYSDQVQISNLTLINSPSWNVHPTYCSNVLIQWLTILAPVDSPNTDGINPDSSSNVRIEDSFVVSGDDCIAVKSGWDEYGIKFGRPT QHLVIRRFTCISPDSATIALGSEMSGGIQDVRAEDITALSTQSGVRIKTAVGRGAYVKDIFVRRMTLKTMKYAFWMTGSYGSHPDTGYDPKALPEIKGIS YKDIVAENVTYSARLEGIENDPFTGICISNVNISLTQKPKELQWNCTDIQG |
Full Sequence |
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Protein Sequence Length: 453 Download |
MISIFLILGS LVSTLAGAST EYQAINCRKH SAVLTDFGGV GDGKTSNTKA FKAAIAELSQ 60 YASDGGAQLI VPPGKWLTGS FNLSSHFTLF LHKDAVLLAS QDEAEWPAFP PLPSYGVGRD 120 EHAGRFSSLI FGTHLTDVVV TGNNGTIDGQ GAVWWDKFHQ KKLKLTRPYL IEFLYSDQVQ 180 ISNLTLINSP SWNVHPTYCS NVLIQWLTIL APVDSPNTDG INPDSSSNVR IEDSFVVSGD 240 DCIAVKSGWD EYGIKFGRPT QHLVIRRFTC ISPDSATIAL GSEMSGGIQD VRAEDITALS 300 TQSGVRIKTA VGRGAYVKDI FVRRMTLKTM KYAFWMTGSY GSHPDTGYDP KALPEIKGIS 360 YKDIVAENVT YSARLEGIEN DPFTGICISN VNISLTQKPK ELQWNCTDIQ GVSSKVTPQP 420 CAALLEKSIE CPFPEDRLPI EDVKLQTCSA TS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 3.0e-28 | 1 | 309 | 322 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 4.0e-30 | 34 | 418 | 399 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-30 | 34 | 393 | 373 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-32 | 130 | 409 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-57 | 32 | 399 | 400 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD32865.1 | 0 | 1 | 452 | 14 | 464 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ACU17976.1 | 0 | 21 | 452 | 42 | 473 | unknown [Glycine max] |
RefSeq | XP_002273177.1 | 0 | 1 | 449 | 1 | 451 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327490.1 | 0 | 1 | 452 | 1 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 1 | 452 | 15 | 473 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 7.00649e-44 | 34 | 394 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 7.00649e-44 | 34 | 394 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 7.00649e-44 | 34 | 394 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 7.00649e-44 | 34 | 394 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-18 | 76 | 367 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |