Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.018G026800.1 |
Family | CBM57 |
Protein Properties | Length: 615 Molecular Weight: 67203.8 Isoelectric Point: 7.4096 |
Chromosome | Chromosome/Scaffold: 18 Start: 2124715 End: 2130037 |
Description | Leucine-rich repeat transmembrane protein kinase |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 404 | 572 | 5.3e-32 |
SVKCGGTAKTSASGIEYEGDFESMGAASLYTSSDNLWAVSNTGNFISNPNGPQYLTQTGSQITGTLDSELYKTARISPSSLRYYGLGLKNGRYSVELHFA EIGMDDSHSWKGLGRRLFDIYIQGEIVLKDFNIKNEAGGSKKALIKTFEANVTNTIMDIHFFWAGKGTC |
Full Sequence |
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Protein Sequence Length: 615 Download |
MGVLSFCFFV FWVSQVVFAQ QTTDPNEVDA LNRLIDYWNL RDKLNITNDP CIQNAAWAKK 60 QANPRVACNC SSNPCHITHL KIHALDISGE LPSELFVLKE LMNLDFGKNV LNGAIPAEIE 120 RLSNMQYLNL GINNFTGVVP QELGNLTKLI TLDFGSNNFI GPLPTSLGKL TSLQELYINS 180 SGVSGRIPQE FANLKSLRTL WASDNLFTGK LPAFFGNLTK LRNLRLQGTL LEGPIPSSFS 240 ALKKLGDLRI GDLNGEDSSL EFLLDQKNLT ILILRNCLLS GQIPDQLGNF SQLQELDLSF 300 NKLTGQIPDS FQDLASLHYL YLGSNNLSGQ LPANIIGLNL IAIDVSFNPL SGNLPQNSMR 360 VGLSMNAVGT SINANNLQGK ASGMLQCLKA DFKCSNKVPS KTFSVKCGGT AKTSASGIEY 420 EGDFESMGAA SLYTSSDNLW AVSNTGNFIS NPNGPQYLTQ TGSQITGTLD SELYKTARIS 480 PSSLRYYGLG LKNGRYSVEL HFAEIGMDDS HSWKGLGRRL FDIYIQGEIV LKDFNIKNEA 540 GGSKKALIKT FEANVTNTIM DIHFFWAGKG TCCIPYQGTY GPLVSAIHVS QGRSILTFSF 600 SSMQISICKL PLHF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00113 | PLN00113 | 0.0001 | 289 | 359 | 73 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 1.0e-36 | 80 | 407 | 359 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 5.0e-40 | 77 | 380 | 328 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 5.0e-40 | 66 | 356 | 293 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
pfam11721 | Malectin | 2.0e-56 | 403 | 587 | 188 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
Gene Ontology | |
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GO Term | Description |
GO:0005515 | protein binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI21051.1 | 0 | 1 | 591 | 1 | 591 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002282711.1 | 0 | 1 | 591 | 157 | 733 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309634.1 | 0 | 15 | 592 | 15 | 466 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002324865.1 | 0 | 1 | 591 | 1 | 536 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515504.1 | 0 | 1 | 591 | 245 | 837 | ATP binding protein, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3rj0_A | 1e-28 | 109 | 333 | 325 | 553 | A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide |
PDB | 3rj0_A | 2e-24 | 88 | 356 | 404 | 719 | A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide |
PDB | 3rj0_A | 9e-24 | 77 | 355 | 222 | 552 | A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide |
PDB | 3rj0_A | 0.00000000003 | 101 | 379 | 99 | 379 | A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide |
PDB | 3riz_A | 1e-28 | 109 | 333 | 325 | 553 | A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain |