Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.018G026800.2 |
Family | CBM57 |
Protein Properties | Length: 609 Molecular Weight: 66548.1 Isoelectric Point: 7.2126 |
Chromosome | Chromosome/Scaffold: 18 Start: 2125388 End: 2130536 |
Description | Leucine-rich repeat transmembrane protein kinase |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 349 | 517 | 5.2e-32 |
SVKCGGTAKTSASGIEYEGDFESMGAASLYTSSDNLWAVSNTGNFISNPNGPQYLTQTGSQITGTLDSELYKTARISPSSLRYYGLGLKNGRYSVELHFA EIGMDDSHSWKGLGRRLFDIYIQGEIVLKDFNIKNEAGGSKKALIKTFEANVTNTIMDIHFFWAGKGTC |
Full Sequence |
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Protein Sequence Length: 609 Download |
MGVLSFCFFV FWVSQVVFAQ QTTDPNEVDA LNRLIDYWNL RDKLNITNDP CIQNAAWAKK 60 QANPRVACNC SSNPCHITHL KIHALDISGE LPSELFVLKE LMNLDFGKNV LNGAIPAEIE 120 RDFGSNNFIG PLPTSLGKLT SLQELWASDN LFTGKLPAFF GNLTKLRNLR LQGTLLEGPI 180 PSSFSALKKL GDLRIGDLNG EDSSLEFLLD QKNLTILILR NCLLSGQIPD QLGNFSQLQE 240 LDLSFNKLTG QIPDSFQDLA SLHYLYLGSN NLSGQLPANI IGLNLIAIDV SFNPLSGNLP 300 QNSMRVGLSM NAVGTSINAN NLQGKASGML QCLKADFKCS NKVPSKTFSV KCGGTAKTSA 360 SGIEYEGDFE SMGAASLYTS SDNLWAVSNT GNFISNPNGP QYLTQTGSQI TGTLDSELYK 420 TARISPSSLR YYGLGLKNGR YSVELHFAEI GMDDSHSWKG LGRRLFDIYI QGEIVLKDFN 480 IKNEAGGSKK ALIKTFEANV TNTIMDIHFF WAGKGTCCIP YQGTYGPLVS AIHVSQVSDG 540 AGSSKRDKKR VGKLVGISMA CVAGLVIISS VFYLWWIKED SSQHMRIYTG HPELLMGLER 600 MVIQGKEP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00113 | PLN00113 | 1.0e-22 | 86 | 299 | 224 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 9.0e-28 | 87 | 301 | 223 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 1.0e-28 | 70 | 352 | 294 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 4.0e-36 | 66 | 301 | 247 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
pfam11721 | Malectin | 7.0e-57 | 348 | 532 | 188 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
Gene Ontology | |
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GO Term | Description |
GO:0005515 | protein binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI21051.1 | 0 | 1 | 593 | 1 | 648 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002282711.1 | 0 | 1 | 553 | 157 | 751 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309634.1 | 0 | 15 | 536 | 15 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002324865.1 | 0 | 1 | 608 | 1 | 608 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515504.1 | 0 | 1 | 556 | 245 | 857 | ATP binding protein, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3rj0_A | 0.000000000000005 | 87 | 301 | 451 | 719 | A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain |
PDB | 3rj0_A | 0.000000000007 | 77 | 301 | 222 | 481 | A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain |
PDB | 3rj0_A | 0.000000003 | 80 | 277 | 516 | 718 | A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain |
PDB | 3rj0_A | 0.0000004 | 87 | 253 | 403 | 552 | A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain |