Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.018G028700.1 |
Family | GH28 |
Protein Properties | Length: 400 Molecular Weight: 42866 Isoelectric Point: 4.3708 |
Chromosome | Chromosome/Scaffold: 18 Start: 2266047 End: 2268287 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 61 | 381 | 0 |
GTPSLQIPEGKTFLLQPVKFQGPCKSVFVHVQVQGKIIAPNTIEEWNNCQADYWIGFVGVANLNMYGSGLIDGQGSVWWMRAMQANSLNALNFEKCDDLQ LSGLTHVDSPKGHIGITDCNGVLISNLNIAAPENSPNTDGIDMARSTNVHIQDSMIATGDDCVAINGGCSYINITNIACGPGHGISVGSLGKDGQYDTVE EVHVRNCSFTGTQNAARIKTWQGGSGYARKISYEQITLVASKNPIIIDQYYCDGVNNCRNSSTALQVSDVTYSGFQGTSVDEEAIRLDCSDRGCINIVMD NINITSLDPGKTTYAYCEHTS |
Full Sequence |
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Protein Sequence Length: 400 Download |
MQDVYFSFLI LCIAASSFGI GHGQKVFNVV DFGAIGDGQI DDTNAFLSAW QALCGDDVAQ 60 GTPSLQIPEG KTFLLQPVKF QGPCKSVFVH VQVQGKIIAP NTIEEWNNCQ ADYWIGFVGV 120 ANLNMYGSGL IDGQGSVWWM RAMQANSLNA LNFEKCDDLQ LSGLTHVDSP KGHIGITDCN 180 GVLISNLNIA APENSPNTDG IDMARSTNVH IQDSMIATGD DCVAINGGCS YINITNIACG 240 PGHGISVGSL GKDGQYDTVE EVHVRNCSFT GTQNAARIKT WQGGSGYARK ISYEQITLVA 300 SKNPIIIDQY YCDGVNNCRN SSTALQVSDV TYSGFQGTSV DEEAIRLDCS DRGCINIVMD 360 NINITSLDPG KTTYAYCEHT SGTSWFTAPY VPCLSVSGY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-81 | 28 | 364 | 347 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-84 | 59 | 369 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 7.0e-108 | 24 | 398 | 383 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-116 | 6 | 397 | 397 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 7.0e-132 | 18 | 384 | 368 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 27 | 398 | 30 | 400 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 394 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | XP_002324855.1 | 0 | 1 | 399 | 1 | 399 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 395 | 1 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
RefSeq | XP_002515527.1 | 0 | 1 | 395 | 1 | 355 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-24 | 112 | 366 | 100 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-19 | 123 | 379 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-19 | 123 | 379 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-19 | 123 | 379 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-19 | 123 | 379 | 72 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |