Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.018G062700.2 |
Family | GH28 |
Protein Properties | Length: 496 Molecular Weight: 55228.2 Isoelectric Point: 8.5306 |
Chromosome | Chromosome/Scaffold: 18 Start: 7746986 End: 7753191 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 108 | 456 | 0 |
RRGGGQLNVPPGKWLTAPFNLTSHMTLFLAEDAVILGIQDENYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLRDIVITGHNGTIDGQGQTWWKKYRQKL LNHTRGPLVQIMWSSDIVFMNITLRNSPFWTLHPYDCKNVTIRNVTILAPIFEAPNTDGIDPDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPST NILIRNLVVRSMVSAGISIGSEMSGGVSSVTVENLLVWSSRRAVRIKTAPGRGAYVRNITYRNLTFDDVRVGIVIKTDYNEHPDEGYDPKAVPTLQDISF SGIHGQGVRVPVRIHGSEEIPVRNVTFQDMSVGLTYKKKHIFQCAFVQG |
Full Sequence |
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Protein Sequence Length: 496 Download |
MVETIASPLA SRFNYQRLDL KRCVPAFLSS HKILFTLLWI AAFASVFLWQ RNAVRGGFAA 60 FWHGPVRPIP KLRPVAFNLT DFGAVGDGVT LNTEAFERAV SAISKLARRG GGQLNVPPGK 120 WLTAPFNLTS HMTLFLAEDA VILGIQDENY WPLMPPLPSY GYGREHPGPR YGSLIHGQNL 180 RDIVITGHNG TIDGQGQTWW KKYRQKLLNH TRGPLVQIMW SSDIVFMNIT LRNSPFWTLH 240 PYDCKNVTIR NVTILAPIFE APNTDGIDPD SCEDMVIEDC YISVGDDAIA IKSGWDQYGI 300 AYGRPSTNIL IRNLVVRSMV SAGISIGSEM SGGVSSVTVE NLLVWSSRRA VRIKTAPGRG 360 AYVRNITYRN LTFDDVRVGI VIKTDYNEHP DEGYDPKAVP TLQDISFSGI HGQGVRVPVR 420 IHGSEEIPVR NVTFQDMSVG LTYKKKHIFQ CAFVQGRVIG TIFPAPCENL DRYDEQGKLV 480 KLSVSQNITD IDYDF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 9.0e-28 | 77 | 467 | 414 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 4.0e-30 | 34 | 467 | 457 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-30 | 76 | 439 | 375 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 8.0e-39 | 175 | 446 | 282 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-69 | 66 | 402 | 360 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 1 | 495 | 1 | 509 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 1 | 495 | 1 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 1 | 495 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 1 | 495 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 495 | 2 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 70 | 436 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 70 | 436 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 70 | 436 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 70 | 436 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-18 | 105 | 434 | 40 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |