Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.018G068400.1 |
Family | CE8 |
Protein Properties | Length: 382 Molecular Weight: 41895 Isoelectric Point: 9.497 |
Chromosome | Chromosome/Scaffold: 18 Start: 8727397 End: 8732210 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 84 | 375 | 0 |
IVAKNPSAGDFTTIQEAIDSLPFINLVRVIIKIRAGVYKEKVNIPPLKSFITMEGAGADNTIVQWGDTAQTPGARGQPMGTYSSATFAVNSPFFVAKNIT FKNTAPLPAPGAMGQQAVALRISADTAAFLGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQFTGALTAQGRSSLLEDTGFS FVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNRELTVFYGQYKCTGPGASFAGRVSWSRELTDSEAKPFTSLTFIDG |
Full Sequence |
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Protein Sequence Length: 382 Download |
MSNCRYNSVH LFVLTILLLN SGQTLCHTKG LRTRNPRGVQ PMMNASRVQF SEQQFMKWVT 60 FVGSLKHSVF KAAKNKIFPS YTLIVAKNPS AGDFTTIQEA IDSLPFINLV RVIIKIRAGV 120 YKEKVNIPPL KSFITMEGAG ADNTIVQWGD TAQTPGARGQ PMGTYSSATF AVNSPFFVAK 180 NITFKNTAPL PAPGAMGQQA VALRISADTA AFLGCKFLGA QDTLYDHVGR HYYKDCYIEG 240 SVDFIFGNGL SLFEGCHVHA IAQFTGALTA QGRSSLLEDT GFSFVNCKVT GSGALYLGRA 300 WGPFSRVVFA YTYMDNIIIP KGWYNWGDPN RELTVFYGQY KCTGPGASFA GRVSWSRELT 360 DSEAKPFTSL TFIDGSEWIK M* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 6.0e-116 | 83 | 380 | 298 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 2.0e-116 | 82 | 380 | 307 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-117 | 84 | 379 | 297 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-124 | 82 | 379 | 300 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 0 | 2 | 381 | 380 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 5 | 381 | 3 | 379 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_001044216.1 | 0 | 13 | 381 | 12 | 384 | Os01g0743200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_197474.1 | 0 | 21 | 381 | 23 | 383 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002330522.1 | 0 | 1 | 381 | 1 | 381 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 9 | 381 | 8 | 383 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 84 | 380 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 84 | 380 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 3e-30 | 81 | 368 | 31 | 353 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 4e-24 | 80 | 368 | 3 | 329 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 4e-24 | 80 | 368 | 3 | 329 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |