y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.018G149500.2 |
Family | GT5 |
Protein Properties | Length: 619 Molecular Weight: 69165.5 Isoelectric Point: 6.5068 |
Chromosome | Chromosome/Scaffold: 18 Start: 16767368 End: 16774124 |
Description | starch synthase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 119 | 612 | 0 |
HIIHVTAEMAPIAKVGGLGDVVTGLARASLSRGHTVDIVLPFYECIQKQQINDLALISTYDSYHDGNWIPTNAYRGVVSGIPVIFIEPSNEFFKGQQVYG GSYNELEAYLFFSRACLEWMQVTGAQPDIIHVHEWQIGALPLLYWDMYQYLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSMYATAEKAVDDRTIGH NPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASTLMMHCDKYFGVLNGIDTAMWNPATDVFLPAKFHAQKIEGKKLCKYYIQRGLGLAAKSITSSN HVPDATVKIPLVVCITRLVPQKGLHLITHALKHIEELGGQMIVLGKAPDGRVEGEFKRLADMHNQGPSIRILLMYSEELSHMLYAAADMVLVPSMYEPCG LSQIIGMRYGSVPVVRKTGGLADTVFDMDDQSNPEIANGFVFEGIDEGSLNWALDRAFAYYRDKPDEWNCIVKKVIEIDNSWNNTAGKYIEVYN |
Full Sequence |
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Protein Sequence Length: 619 Download |
MIMENALAGK FLKPCFHLNS RKATLVLQKR KGIGTSHKFC YPSKFKIHPL VSHPLHLPNL 60 EAGGVEIQES SYEGLVSDQE IVWPSPDDEI PFWKRDFPSW NVSPEVPNES SVKDSDLMHI 120 IHVTAEMAPI AKVGGLGDVV TGLARASLSR GHTVDIVLPF YECIQKQQIN DLALISTYDS 180 YHDGNWIPTN AYRGVVSGIP VIFIEPSNEF FKGQQVYGGS YNELEAYLFF SRACLEWMQV 240 TGAQPDIIHV HEWQIGALPL LYWDMYQYLS LKKPRIVLTI HNMEHYGECR QEQLSKCGLD 300 GSMYATAEKA VDDRTIGHNP ERLSLLKGGI VYSNAVVTVS PTYLKETLCS GWLASTLMMH 360 CDKYFGVLNG IDTAMWNPAT DVFLPAKFHA QKIEGKKLCK YYIQRGLGLA AKSITSSNHV 420 PDATVKIPLV VCITRLVPQK GLHLITHALK HIEELGGQMI VLGKAPDGRV EGEFKRLADM 480 HNQGPSIRIL LMYSEELSHM LYAAADMVLV PSMYEPCGLS QIIGMRYGSV PVVRKTGGLA 540 DTVFDMDDQS NPEIANGFVF EGIDEGSLNW ALDRAFAYYR DKPDEWNCIV KKVIEIDNSW 600 NNTAGKYIEV YNSVRGRS* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02316 | PLN02316 | 4.0e-126 | 106 | 615 | 518 | + synthase/transferase | ||
PRK00654 | glgA | 2.0e-160 | 118 | 617 | 509 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 9.0e-170 | 118 | 614 | 501 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
PLN02939 | PLN02939 | 6.0e-173 | 110 | 618 | 515 | + transferase, transferring glycosyl groups | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-180 | 119 | 613 | 501 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACD13790.1 | 0 | 13 | 617 | 32 | 614 | starch synthase VI precursor [Solanum lycopersicum] |
GenBank | ACD13791.1 | 0 | 64 | 617 | 57 | 607 | starch synthase VI precursor [Vitis vinifera] |
GenBank | ACL36485.1 | 0 | 30 | 617 | 57 | 655 | starch synthase VI precursor [Picea glauca] |
RefSeq | XP_002268126.1 | 0 | 64 | 617 | 57 | 607 | PREDICTED: starch synthase VI [Vitis vinifera] |
RefSeq | XP_002331426.1 | 0 | 1 | 618 | 1 | 618 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d1j_A | 0 | 118 | 615 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 118 | 615 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 118 | 615 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4t_A | 0 | 118 | 615 | 1 | 477 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2qzs_A | 0 | 118 | 615 | 1 | 477 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX373959 | 300 | 192 | 491 | 0 |
GE474726 | 265 | 140 | 404 | 0 |
CO474248 | 254 | 138 | 391 | 0 |
DV993959 | 263 | 141 | 403 | 0 |
CB978382 | 256 | 298 | 553 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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