Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.019G004800.1 |
Family | CBM57 |
Protein Properties | Length: 599 Molecular Weight: 67187.5 Isoelectric Point: 6.0332 |
Chromosome | Chromosome/Scaffold: 19 Start: 495711 End: 500645 |
Description | Leucine-rich repeat transmembrane protein kinase |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 343 | 514 | 8.2e-29 |
HINCGGSETTVGNTMYEADDEPGGATKYVPKREVWQISTTGHVWDVKPSEDDYIAQNMSILRMNNSQLYTKARLTPLSLTYHVRCLVNGNYSVKLHFAEI VMRDNRSFYSLGRRIFDVYIQDRIVLKDFDIEKAAQGVDKVYIHNSTAKVTDRALEIRLHWAGKGTTTSPKI |
Full Sequence |
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Protein Sequence Length: 599 Download |
MAFILHMLMI LMFCIGAIKL EAEAGLLAPD EVDALLEIAT QVGKKDWNNN VDPCINETSW 60 VTPPSSQRPM FDNNVVCNCS FGVVCHIVSI FLKGQDLAGS LPKSIVKLPY LTHLDLWANY 120 LSGNIPPEWA NTKLEILSIA VNRLTGPIPS YLGKIITLRC LNIQNNMFSG IVPPELGNLV 180 NLENINLSAN NFTGELPLAL SNLTKLKELR LSSNNFIGRI PDFIQSWKQL DILEIQAGGF 240 SGPIPLSISL LNSLTQLRIS NLLGDGSEFP NLESMQNMTY LDLSFNRLKG DLPTDYDDLI 300 SLEKIEFDLS YNNFTEIPTN CKETLKPVEC LSDYCSKDQY WVHINCGGSE TTVGNTMYEA 360 DDEPGGATKY VPKREVWQIS TTGHVWDVKP SEDDYIAQNM SILRMNNSQL YTKARLTPLS 420 LTYHVRCLVN GNYSVKLHFA EIVMRDNRSF YSLGRRIFDV YIQDRIVLKD FDIEKAAQGV 480 DKVYIHNSTA KVTDRALEIR LHWAGKGTTT SPKIGIYGPL ISAIDIEPEF KPPTKGKRKK 540 LIVAGSVVLL LFLIFILLSV LWWKGYLGGR KSRDQVCLIP HTFNNENSQR QDCVLYDC* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00113 | PLN00113 | 7.0e-23 | 92 | 318 | 231 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 5.0e-24 | 72 | 293 | 249 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 1.0e-26 | 37 | 318 | 291 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 9.0e-30 | 25 | 318 | 304 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
pfam11721 | Malectin | 1.0e-49 | 342 | 524 | 187 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
Gene Ontology | |
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GO Term | Description |
GO:0005515 | protein binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002300205.1 | 0 | 32 | 574 | 1 | 601 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002329475.1 | 0 | 1 | 598 | 1 | 598 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331887.1 | 0 | 13 | 575 | 23 | 623 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332887.1 | 0 | 115 | 575 | 1 | 522 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528777.1 | 0 | 17 | 540 | 27 | 585 | ATP binding protein, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3rj0_A | 4e-19 | 92 | 307 | 227 | 446 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 3rj0_A | 4e-18 | 75 | 295 | 410 | 648 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 3rj0_A | 9e-18 | 87 | 267 | 367 | 550 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 3rj0_A | 0.000000000000001 | 90 | 248 | 396 | 555 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
PDB | 3rj0_A | 0.00000000000003 | 106 | 322 | 145 | 387 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |