Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.019G007800.1 |
Family | CBM43 |
Protein Properties | Length: 176 Molecular Weight: 19221.2 Isoelectric Point: 8.417 |
Chromosome | Chromosome/Scaffold: 19 Start: 901313 End: 903695 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 55 | 138 | 1.6e-35 |
WCVALPGVSQIDLQNALDWACGLGMADCKPIQHGGACFDPDTLVSHASYAFNNYYQQNGNSDIACNFGGTATLTNIDPSHGKCN |
Full Sequence |
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Protein Sequence Length: 176 Download |
MRNEVMVLPC LLLLHCYVVL TMETINARES RGCYPSHNIV TSRRKHKLFL AGTSWCVALP 60 GVSQIDLQNA LDWACGLGMA DCKPIQHGGA CFDPDTLVSH ASYAFNNYYQ QNGNSDIACN 120 FGGTATLTNI DPSHGKCNFA LPGSVRSSAP SSLKCKTSFM WVKFAGILLL LYLRR* 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 1.0e-23 | 54 | 126 | 82 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-42 | 54 | 139 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACJ85566.1 | 0 | 1 | 172 | 1 | 175 | unknown [Medicago truncatula] |
GenBank | ACU17215.1 | 0 | 1 | 163 | 1 | 163 | unknown [Glycine max] |
EMBL | CBI30973.1 | 0 | 1 | 167 | 549 | 714 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002332014.1 | 0 | 22 | 141 | 1 | 119 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332015.1 | 0 | 22 | 141 | 1 | 119 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 6e-25 | 51 | 139 | 9 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |