Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.019G012000.1 |
Family | CBM43 |
Protein Properties | Length: 175 Molecular Weight: 18740.6 Isoelectric Point: 6.477 |
Chromosome | Chromosome/Scaffold: 19 Start: 1413876 End: 1416324 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 54 | 137 | 1.5e-35 |
WCVALPGVSQIDLQNALDWACGLGMADCKPIQHGGACFDPDTLVSHASYAFNNYYQQNGNSDIACNFGGTATLTNIDPSHGKCN |
Full Sequence |
---|
Protein Sequence Length: 175 Download |
MRNEVMVLPC LLLLHCYVVL TMETITQEKA EAAIPVTTLS PPEGNTTFLA GTSWCVALPG 60 VSQIDLQNAL DWACGLGMAD CKPIQHGGAC FDPDTLVSHA SYAFNNYYQQ NGNSDIACNF 120 GGTATLTNID PSHGKCNFAS PGSVRSSAPS SLKCKTSFMW VKFAGILLLL YLRR* 180 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 5.0e-24 | 53 | 125 | 82 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 9.0e-43 | 53 | 138 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACJ85566.1 | 0 | 1 | 171 | 1 | 175 | unknown [Medicago truncatula] |
GenBank | ACU17215.1 | 0 | 1 | 162 | 1 | 163 | unknown [Glycine max] |
EMBL | CBI30973.1 | 0 | 1 | 166 | 549 | 714 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002332014.1 | 0 | 22 | 139 | 1 | 118 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332015.1 | 0 | 22 | 138 | 1 | 117 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 2e-25 | 47 | 140 | 6 | 98 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |