Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.019G066700.1 |
Family | GH28 |
Protein Properties | Length: 394 Molecular Weight: 41887.1 Isoelectric Point: 9.3087 |
Chromosome | Chromosome/Scaffold: 19 Start: 9920048 End: 9921777 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 382 | 0 |
KSACASTKPSKVLIPSGTYWLRKVTLAGPCKAAIKLQVDGILKAPVDPNKLSGGHWVNFRYVDQFTLSGRGTFDGQGKVAWSKSTCHKDKNCKGLPMNLR FDFITNALVRDITTLDSKNFHVNVLGCKNLTFQHFTVRAPGESVNTDGIHIGRSTGIYIIDSKISTGDDCISVGDGTEELHITGVTCGPGHGISVGSLGK YPNEKPVSGIFVKNCTISDTTNGVRIKSWPALYGGVASNMHFEDIVMNNVQNPVIIDQGYCPWNQCTLKAPSKVKISDVSFKSIRGTSATPVVVRIACSS GFPCQKVKLANINLAYRGPGGPAKSQCSNVKP |
Full Sequence |
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Protein Sequence Length: 394 Download |
MGLEVVSSAI ISFSLFLLLA STTQAQSNGV FDVTKYGAGK DITEALTNAW KSACASTKPS 60 KVLIPSGTYW LRKVTLAGPC KAAIKLQVDG ILKAPVDPNK LSGGHWVNFR YVDQFTLSGR 120 GTFDGQGKVA WSKSTCHKDK NCKGLPMNLR FDFITNALVR DITTLDSKNF HVNVLGCKNL 180 TFQHFTVRAP GESVNTDGIH IGRSTGIYII DSKISTGDDC ISVGDGTEEL HITGVTCGPG 240 HGISVGSLGK YPNEKPVSGI FVKNCTISDT TNGVRIKSWP ALYGGVASNM HFEDIVMNNV 300 QNPVIIDQGY CPWNQCTLKA PSKVKISDVS FKSIRGTSAT PVVVRIACSS GFPCQKVKLA 360 NINLAYRGPG GPAKSQCSNV KPIISGIMSA SGC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 5.0e-75 | 33 | 381 | 359 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 4.0e-84 | 30 | 393 | 370 | + polygalacturonase | ||
PLN02793 | PLN02793 | 6.0e-88 | 23 | 393 | 380 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-120 | 54 | 381 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-131 | 31 | 386 | 362 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 1 | 393 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 1 | 393 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 1 | 393 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 1 | 393 | 1 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 1 | 393 | 1 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-18 | 116 | 380 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-18 | 116 | 380 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-18 | 116 | 380 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-18 | 116 | 380 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-18 | 116 | 380 | 73 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |