Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.019G067100.1 |
Family | GH28 |
Protein Properties | Length: 394 Molecular Weight: 41530.4 Isoelectric Point: 7.7745 |
Chromosome | Chromosome/Scaffold: 19 Start: 9966641 End: 9968418 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 382 | 0 |
KDACASTNPSKVLIPSGTYSLRKLTLAGPCKAAIELQVDGMLKAPVDPNQFSGGHWVNFGHVDKFTLSGSGTFDGQGKAAWSKSTCQKDKDCDSLPMNLR FDFITNALVRDITTLDSKNFHVNVLGCKNLTFQHFTVSAPGESVNTDGIHVGQSTGIYIIDSKIGTGDDCISVGDGTEELHITGVTCGPGHGISVGSLGK YPNEKPVSGIFVKNCTLSDTTNGVRIKSWPALYGGVASNMHFEDIVMNNVQNPVIIDQVYCPWNQCSLKAPSKVKISGVSFKNIRGTSATPVVVQIACSS GFPCEKVELADIKVAYSGPDGPAKSQCSNVKP |
Full Sequence |
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Protein Sequence Length: 394 Download |
MGLKVVSSAI ISFSLFLLLA STAKAQSKGV FDVTKYGSDK DITEALTNAW KDACASTNPS 60 KVLIPSGTYS LRKLTLAGPC KAAIELQVDG MLKAPVDPNQ FSGGHWVNFG HVDKFTLSGS 120 GTFDGQGKAA WSKSTCQKDK DCDSLPMNLR FDFITNALVR DITTLDSKNF HVNVLGCKNL 180 TFQHFTVSAP GESVNTDGIH VGQSTGIYII DSKIGTGDDC ISVGDGTEEL HITGVTCGPG 240 HGISVGSLGK YPNEKPVSGI FVKNCTLSDT TNGVRIKSWP ALYGGVASNM HFEDIVMNNV 300 QNPVIIDQVY CPWNQCSLKA PSKVKISGVS FKNIRGTSAT PVVVQIACSS GFPCEKVELA 360 DIKVAYSGPD GPAKSQCSNV KPIISGTMSA PGC* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02218 | PLN02218 | 1.0e-74 | 41 | 393 | 359 | + polygalacturonase ADPG |
PLN02155 | PLN02155 | 3.0e-84 | 30 | 379 | 356 | + polygalacturonase |
PLN02793 | PLN02793 | 9.0e-87 | 23 | 393 | 382 | + Probable polygalacturonase |
pfam00295 | Glyco_hydro_28 | 4.0e-119 | 54 | 381 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
PLN02188 | PLN02188 | 2.0e-133 | 24 | 393 | 376 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 1 | 393 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 1 | 393 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 1 | 393 | 1 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 1 | 393 | 1 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 1 | 393 | 1 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-17 | 117 | 310 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.000000000000002 | 195 | 380 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000002 | 195 | 380 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000002 | 195 | 380 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.000000000000002 | 195 | 380 | 153 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |