Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.T008600.2 |
Family | CBM57 |
Protein Properties | Length: 216 Molecular Weight: 24723.8 Isoelectric Point: 8.5287 |
Chromosome | Chromosome/Scaffold: 24 Start: 248669 End: 249824 |
Description | Leucine-rich repeat transmembrane protein kinase |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 17 | 190 | 3.6e-23 |
HINCGGQDVKNRRIWYEGDKGSESNAAARSYYRLRSNRGFSSTGDFMDDDNFYNDKYTLQSNSNLIDSGLYATARKTPLSITYYGYCLENGNYTVRLHFA EIEFTYEKLYNKVARRVFDIYIQETMFQGIQVQKVFNFTEEAKGSNRNFTIPFNTTVTDRTLEIRLYWAGKGTT |
Full Sequence |
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Protein Sequence Length: 216 Download |
MSNGILVLCA ADYRSFHINC GGQDVKNRRI WYEGDKGSES NAAARSYYRL RSNRGFSSTG 60 DFMDDDNFYN DKYTLQSNSN LIDSGLYATA RKTPLSITYY GYCLENGNYT VRLHFAEIEF 120 TYEKLYNKVA RRVFDIYIQE TMFQGIQVQK VFNFTEEAKG SNRNFTIPFN TTVTDRTLEI 180 RLYWAGKGTT VIPIRGNYGP IISAISVCYM LQNLL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12819 | Malectin_like | 0.005 | 70 | 138 | 74 | + Carbohydrate-binding protein of the ER. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. | ||
PLN03150 | PLN03150 | 1.0e-6 | 60 | 207 | 172 | + hypothetical protein; Provisional | ||
pfam11721 | Malectin | 4.0e-40 | 15 | 205 | 194 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002317375.1 | 0 | 1 | 211 | 1 | 211 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332248.1 | 0 | 3 | 208 | 283 | 485 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332683.1 | 0 | 5 | 208 | 10 | 210 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332687.1 | 0 | 1 | 208 | 1 | 205 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333063.1 | 0 | 7 | 208 | 167 | 365 | predicted protein [Populus trichocarpa] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EG459739 | 213 | 6 | 207 | 0 |
DK507929 | 206 | 9 | 208 | 0 |
EY682383 | 199 | 9 | 207 | 0 |
FE709838 | 203 | 8 | 207 | 0 |
DT005617 | 207 | 2 | 206 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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