| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.T101100.1 |
| Family | GH14 |
| Protein Properties | Length: 290 Molecular Weight: 32510.9 Isoelectric Point: 5.8263 |
| Chromosome | Chromosome/Scaffold: 146 Start: 3059 End: 6063 |
| Description | beta-amylase 5 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 43 | 208 | 0 |
| QLLMHGDDILDEANKAFVGCKVKLAAKVSGLHWWYKHHSHAAELTAGYYNLKDRDGYRPAARILSRHHAIMNFTCLEMRDSEQSAEAKSGPQELVQQVLS GAWREKIEVAGENALSRYDAEAYNQILLNARPNGVNKWGPPKLRMFGVTYLRLYDELFEENNFNLF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 290 Download |
| MADFLEAGQI IDIEVGCGAA GELRYPSYPE TQGWVFPGIG EFQLLMHGDD ILDEANKAFV 60 GCKVKLAAKV SGLHWWYKHH SHAAELTAGY YNLKDRDGYR PAARILSRHH AIMNFTCLEM 120 RDSEQSAEAK SGPQELVQQV LSGAWREKIE VAGENALSRY DAEAYNQILL NARPNGVNKW 180 GPPKLRMFGV TYLRLYDELF EENNFNLFKT FVRKMHADQD YCPDPSKYGH EIGPLERSNP 240 PIPVDDIIDA TTPMKPFPWN KQTDMPVDGA GQFGLLGGLI NGIKSIFFK* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00197 | PLN00197 | 4.0e-10 | 10 | 43 | 35 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 4.0e-11 | 8 | 43 | 37 | + beta-amylase | ||
| PLN00197 | PLN00197 | 2.0e-48 | 30 | 220 | 198 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 1.0e-53 | 43 | 215 | 173 | + beta-amylase | ||
| PLN02801 | PLN02801 | 0 | 1 | 288 | 353 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK30294.1 | 0.00000000000007 | 1 | 43 | 170 | 212 | AF353207_1 beta-amylase [Castanea crenata] |
| GenBank | AAK30294.1 | 0 | 43 | 287 | 274 | 513 | AF353207_1 beta-amylase [Castanea crenata] |
| EMBL | CBI28977.1 | 0 | 43 | 287 | 263 | 507 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002327920.1 | 3e-19 | 1 | 43 | 169 | 211 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002327920.1 | 0 | 43 | 289 | 273 | 519 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1uko_D | 0 | 1 | 269 | 165 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_C | 0 | 1 | 269 | 165 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_B | 0 | 1 | 269 | 165 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1uko_A | 0 | 1 | 269 | 165 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_D | 0 | 1 | 269 | 165 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CV281021 | 262 | 27 | 288 | 0 |
| CK095967 | 244 | 47 | 290 | 0 |
| DT477770 | 233 | 58 | 290 | 0 |
| DT482843 | 230 | 61 | 290 | 0 |
| AJ778586 | 225 | 52 | 276 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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