Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.T163400.1 |
Family | GH116 |
Protein Properties | Length: 492 Molecular Weight: 55645 Isoelectric Point: 4.9594 |
Chromosome | Chromosome/Scaffold: 800 Start: 13302 End: 16944 |
Description | Beta-glucosidase, GBA2 type family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH116 | 71 | 429 | 0 |
GQLLYLEGTEYLMWNTYDVHFYASFALVMLFPKLELNLQRDFAAAVLMHDPSRMQIMSDGKWVPRKVLGAVPHDVGLNDPWFEINAYNLFSTARWKDLNC KFVLQVYRDVVATGDKDFARAVWPSVYVAMAYMDQFDKDGDGMIENEGIPDQTYDTWSVTGVSAYCGGLWVAALQATSAMAHEVGDDGSANYFWIKYQKA KTVYGKLWNGSYFNYDSSGNKSIQADQLAGQWYARACGLSPVVDGDKARKALEKIYEFNVLKVKGGTRGAVNGMLPDGRVDLTAMQTKEIWPGVTYALSA SMIQEGLEEMAFQTAVGIYNAAWSEEGLGYSFQIPESWDMNDQYRSLCYMRPLAIWAMQ |
Full Sequence |
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Protein Sequence Length: 492 Download |
MQNLTAVRER RFSLERSSSG YKNGNGIAYK NDTAIEILER MASTYEQLHN PVSSNSVFGA 60 NLLQNGEENI GQLLYLEGTE YLMWNTYDVH FYASFALVML FPKLELNLQR DFAAAVLMHD 120 PSRMQIMSDG KWVPRKVLGA VPHDVGLNDP WFEINAYNLF STARWKDLNC KFVLQVYRDV 180 VATGDKDFAR AVWPSVYVAM AYMDQFDKDG DGMIENEGIP DQTYDTWSVT GVSAYCGGLW 240 VAALQATSAM AHEVGDDGSA NYFWIKYQKA KTVYGKLWNG SYFNYDSSGN KSIQADQLAG 300 QWYARACGLS PVVDGDKARK ALEKIYEFNV LKVKGGTRGA VNGMLPDGRV DLTAMQTKEI 360 WPGVTYALSA SMIQEGLEEM AFQTAVGIYN AAWSEEGLGY SFQIPESWDM NDQYRSLCYM 420 RPLAIWAMQW ALSKPKDFKE EMHHEGIEDE SYLKQHAGFS KVAHLLRLPE EEAPKSFFQA 480 IYEFTCKRML F* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR01561 | gde_arch | 0.0001 | 156 | 325 | 191 | + glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
COG3408 | GDB1 | 9.0e-8 | 129 | 409 | 306 | + Glycogen debranching enzyme [Carbohydrate transport and metabolism] | ||
COG4354 | COG4354 | 4.0e-74 | 70 | 434 | 384 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
pfam04685 | DUF608 | 9.0e-169 | 71 | 430 | 367 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. |
Gene Ontology | |
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GO Term | Description |
GO:0004348 | glucosylceramidase activity |
GO:0006665 | sphingolipid metabolic process |
GO:0016021 | integral to membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI31319.1 | 0 | 1 | 489 | 456 | 947 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002264575.1 | 0 | 1 | 489 | 457 | 947 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275782.1 | 0 | 1 | 489 | 472 | 963 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002325943.1 | 0 | 1 | 491 | 401 | 891 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525532.1 | 0 | 1 | 489 | 455 | 946 | conserved hypothetical protein [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY292040 | 359 | 84 | 436 | 0 |
JG703027 | 328 | 89 | 413 | 0 |
FC917648 | 305 | 84 | 385 | 0 |
GW866491 | 289 | 85 | 373 | 0 |
BU895346 | 232 | 30 | 261 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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