Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.T170900.1 |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 42087.3 Isoelectric Point: 8.5322 |
Chromosome | Chromosome/Scaffold: 1089 Start: 1956 End: 3482 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 384 | 0 |
TAACGSTNSTIIYIPKGRYLLGSVAFTGGNCKSPDIIIRIDGTLIAPEDYRILGLASNWLSFESVSGVSIVGGALDARGSPLWDCKSKGSNCPAGATTLS FVNSNNIKINGLLSLNSQMFHIVINGCQNVQVQGVRVIAAGDSPNTDGIHVQLSTDVVIMNSSIKTGDDCISIGPGTKNLWIERVRCGPGHGISIGSLAK TMDEAGVQNVTVKSTIFTGTTNGFRIKSWARHSTGFAQAIRFIGATMINVQNPIIIDQNYCPHNLNCPNEVSGIQISDVIYQGIRGTSATPVAIKFDCSF KYPCKGITLQNVNLTYLNKEAQSTCTNAIGK |
Full Sequence |
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Protein Sequence Length: 396 Download |
MAKLLCIPSL LLFIFLVSLN INISSAKTVY NVLTYGARPN GKTDSTQAFL HAWTAACGST 60 NSTIIYIPKG RYLLGSVAFT GGNCKSPDII IRIDGTLIAP EDYRILGLAS NWLSFESVSG 120 VSIVGGALDA RGSPLWDCKS KGSNCPAGAT TLSFVNSNNI KINGLLSLNS QMFHIVINGC 180 QNVQVQGVRV IAAGDSPNTD GIHVQLSTDV VIMNSSIKTG DDCISIGPGT KNLWIERVRC 240 GPGHGISIGS LAKTMDEAGV QNVTVKSTIF TGTTNGFRIK SWARHSTGFA QAIRFIGATM 300 INVQNPIIID QNYCPHNLNC PNEVSGIQIS DVIYQGIRGT SATPVAIKFD CSFKYPCKGI 360 TLQNVNLTYL NKEAQSTCTN AIGKISGQVQ PDNCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 4.0e-83 | 57 | 386 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-87 | 25 | 395 | 378 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-89 | 26 | 391 | 373 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 2.0e-104 | 10 | 394 | 401 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-140 | 11 | 395 | 387 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF42034.1 | 0 | 3 | 395 | 5 | 398 | polygalacturonase3 [Pyrus communis] |
RefSeq | XP_002262690.1 | 0 | 24 | 395 | 26 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 4 | 395 | 5 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 11 | 395 | 4 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529090.1 | 0 | 9 | 395 | 13 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-17 | 157 | 368 | 159 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-16 | 125 | 313 | 77 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-16 | 125 | 313 | 77 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-16 | 125 | 313 | 77 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-16 | 125 | 313 | 77 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |