Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.T171000.1 |
Family | GH28 |
Protein Properties | Length: 398 Molecular Weight: 42422.5 Isoelectric Point: 7.542 |
Chromosome | Chromosome/Scaffold: 1089 Start: 8598 End: 10130 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 56 | 384 | 0 |
AAACGSTDPTIIYIPEGRYLLGSVAFTGGNCKSPDIIVRIDGTLIAPEDYRILGLASNWLSFEGVSGVSIVGGALDAKGSPLWDCKSKGSNCPAGATTLS FVNSNNIKINGLLSLNSQMFHIVINGCQNVQVQGVRVIAAGDSPNTDGIHVQLSTDVVIMNSSIKTGDDCISIGPGTKNLWIERVRCGPGHGISIGSLAK SMDEAGVQNVTVKSTIFTGTTNGFRIKSWARHSTGFAQAIRFIGATMINVQNPIIIDQNYCPHNLNCPTEVSGIQISDVIYQGIRGTSATPVAIKFDCSF KYPCKGITLQNVNLTYLNKEARSTCTNAI |
Full Sequence |
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Protein Sequence Length: 398 Download |
MEMLMLCLHS ILFFIFLVSL NNINISSAET IYNVQTYGAK PNGKTDSTQA FLDAWAAACG 60 STDPTIIYIP EGRYLLGSVA FTGGNCKSPD IIVRIDGTLI APEDYRILGL ASNWLSFEGV 120 SGVSIVGGAL DAKGSPLWDC KSKGSNCPAG ATTLSFVNSN NIKINGLLSL NSQMFHIVIN 180 GCQNVQVQGV RVIAAGDSPN TDGIHVQLST DVVIMNSSIK TGDDCISIGP GTKNLWIERV 240 RCGPGHGISI GSLAKSMDEA GVQNVTVKST IFTGTTNGFR IKSWARHSTG FAQAIRFIGA 300 TMINVQNPII IDQNYCPHNL NCPTEVSGIQ ISDVIYQGIR GTSATPVAIK FDCSFKYPCK 360 GITLQNVNLT YLNKEARSTC TNAIGKTYGQ VQPDNCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 5.0e-84 | 59 | 383 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-90 | 27 | 397 | 378 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-91 | 28 | 393 | 373 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 8.0e-104 | 1 | 396 | 408 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-139 | 11 | 397 | 390 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC22689.1 | 0 | 12 | 397 | 14 | 398 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 12 | 397 | 14 | 398 | polygalacturonase3 [Pyrus communis] |
RefSeq | XP_002262690.1 | 0 | 26 | 397 | 26 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 1 | 397 | 1 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 12 | 397 | 4 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-17 | 159 | 370 | 159 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 1e-16 | 115 | 345 | 63 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-16 | 115 | 345 | 63 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-16 | 115 | 345 | 63 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-16 | 115 | 345 | 63 | 295 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |