Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.T177500.1 |
Family | GH28 |
Protein Properties | Length: 298 Molecular Weight: 31991.6 Isoelectric Point: 8.5994 |
Chromosome | Chromosome/Scaffold: 1671 Start: 185 End: 1480 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 6 | 288 | 0 |
WKSACASTKPSKVLIPSGTYGLRKVTLAGPCKAAIKLQVDGILKAPVDPNKLSGGHWVNFRYVDQFTLSGRGTFDGQGKVAWSKSTCHKDKNCKGLPMNL RFDFITNALVRDITTLDSKNFHVNVLGCKNLTFQHFTVRAPGESVNTDGIHIGRSTGIYIIDSKISTGDDCISVGDGTEELHITGVTCGPGHGISVGSLG KYPNEKPVSGIFVKNCTISDTTNGVRIKSWPALYGGVASNMHFEDIVMNNVQNPVIIDQGYCPWNQCTLKISDVSFKSIRGTS |
Full Sequence |
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Protein Sequence Length: 298 Download |
ALTNAWKSAC ASTKPSKVLI PSGTYGLRKV TLAGPCKAAI KLQVDGILKA PVDPNKLSGG 60 HWVNFRYVDQ FTLSGRGTFD GQGKVAWSKS TCHKDKNCKG LPMNLRFDFI TNALVRDITT 120 LDSKNFHVNV LGCKNLTFQH FTVRAPGESV NTDGIHIGRS TGIYIIDSKI STGDDCISVG 180 DGTEELHITG VTCGPGHGIS VGSLGKYPNE KPVSGIFVKN CTISDTTNGV RIKSWPALYG 240 GVASNMHFED IVMNNVQNPV IIDQGYCPWN QCTLKISDVS FKSIRGTSAT LGCCSDCL 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-63 | 1 | 290 | 301 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 4.0e-71 | 1 | 290 | 298 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-75 | 1 | 290 | 301 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-105 | 10 | 290 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 8.0e-109 | 1 | 291 | 299 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 1 | 290 | 45 | 340 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 1 | 290 | 45 | 340 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 1 | 290 | 45 | 340 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 1 | 290 | 45 | 340 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333303.1 | 0 | 1 | 276 | 45 | 320 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-18 | 75 | 294 | 115 | 341 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000000006 | 72 | 287 | 73 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000006 | 72 | 287 | 73 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000006 | 72 | 287 | 73 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000000006 | 72 | 287 | 73 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CU617067 | 263 | 2 | 264 | 0 |
EE255351 | 259 | 10 | 268 | 0 |
FC885548 | 271 | 1 | 268 | 0 |
EE255197 | 257 | 10 | 266 | 0 |
DY292761 | 271 | 1 | 268 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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