| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s104_31V6.1 |
| Family | GH28 |
| Protein Properties | Length: 429 Molecular Weight: 46138.8 Isoelectric Point: 8.7125 |
| Chromosome | Chromosome/Scaffold: 104 Start: 292834 End: 296399 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 60 | 392 | 0 |
| IPSAVVLVPAGRKFSLRPIVFAGPCASKLQLKVEGTIVAMEGPGSGTGDHKAWLEFKNLRDFALVGNGVINGKGRRWWSQVCRPTMKRCNPGSKEPPNGL VFQNCVNVRVSNLRIRDSPKFHLTFTNCDGVRATGLLITAPRNSPNTDGIHLKDCQNVFILNCRIRTGDDCVSIQTGSSLVLIEDIECGPGHGISVGSLG KSRSKACVWGIKVDRATFDRTTNGFRIKSWQGGSGHAHGIMFLNAKMNKVEKPVVIDQYYCDSATPCANETSAVAISEIIIANITGRSSSMMAVDIKCSE HVPCRNVVLQNITVTTESNKDKSTADISCWNAY | |||
| Full Sequence |
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| Protein Sequence Length: 429 Download |
| MLSTFFSMRA SGGALSSSSS SNNVHGIGEV FNVMMEGAVG DGRTDDGEAF QRAWLHACRI 60 PSAVVLVPAG RKFSLRPIVF AGPCASKLQL KVEGTIVAME GPGSGTGDHK AWLEFKNLRD 120 FALVGNGVIN GKGRRWWSQV CRPTMKRCNP GSKEPPNGLV FQNCVNVRVS NLRIRDSPKF 180 HLTFTNCDGV RATGLLITAP RNSPNTDGIH LKDCQNVFIL NCRIRTGDDC VSIQTGSSLV 240 LIEDIECGPG HGISVGSLGK SRSKACVWGI KVDRATFDRT TNGFRIKSWQ GGSGHAHGIM 300 FLNAKMNKVE KPVVIDQYYC DSATPCANET SAVAISEIII ANITGRSSSM MAVDIKCSEH 360 VPCRNVVLQN ITVTTESNKD KSTADISCWN AYGFITNITS PMSCSLKPEP AGTGLFDPYR 420 NPTRPLGC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-82 | 1 | 391 | 397 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 3.0e-85 | 31 | 404 | 378 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-88 | 59 | 404 | 346 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 5.0e-91 | 37 | 388 | 362 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-117 | 30 | 404 | 377 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK78768.1 | 0 | 25 | 410 | 1 | 382 | putative allergen Cup a 2 variant 1 [Hesperocyparis arizonica] |
| GenBank | ABK78769.1 | 0 | 25 | 408 | 1 | 380 | putative allergen Cup a 2 variant 2 [Hesperocyparis arizonica] |
| DDBJ | BAF32143.1 | 0 | 25 | 423 | 23 | 416 | pollen allergen [Chamaecyparis obtusa] |
| Swiss-Prot | Q7M1E7 | 0 | 25 | 423 | 53 | 446 | PGLR2_CHAOB RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; AltName: Full=Major pollen allergen Cha o 2; AltName: Allergen=Cha o 2; Flags: Precursor |
| RefSeq | XP_001768642.1 | 0 | 8 | 428 | 1 | 424 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-23 | 123 | 319 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 2e-19 | 8 | 393 | 2 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1nhc_F | 3e-17 | 83 | 345 | 29 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-17 | 83 | 345 | 29 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-17 | 83 | 345 | 29 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DC956672 | 240 | 190 | 429 | 0 |
| DC930743 | 204 | 1 | 204 | 0 |
| DC945259 | 139 | 291 | 429 | 0 |
| DW479564 | 313 | 38 | 345 | 0 |
| FS942787 | 301 | 108 | 408 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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