| Basic Information | |
|---|---|
| Species | Physcomitrella patens |
| Cazyme ID | Pp1s106_48V6.2 |
| Family | GH51 |
| Protein Properties | Length: 696 Molecular Weight: 76108.7 Isoelectric Point: 5.2584 |
| Chromosome | Chromosome/Scaffold: 106 Start: 286676 End: 292793 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH51 | 225 | 673 | 0 |
| DHYARLSLTTGTKGEYWIDQVSAMPTDTFKGHGFRKELATMIADLKPGFLRFPGGCYVEGVRLANAFRWRDSVGDYENRPGHYGDVWNYWSDDGFGYFEG LQLAEDIGAAPIWVFNNGISHWESVPTAEIGPWVQDVLEGIEFARGPVNSTWGAVRAQMGHPDPFPLLYVAVGNEDCEKPYYRGNYMEFYKAIKLMYPDI ELISNCDGSRGPLDHPADLYDYHIYTTANNLFSMRHSFDRTSRVGPKAFVSEYAVVGADSGTGSLLASLAEGAFLIGLELNSDIVEMASYAPLFVNANDR RWNPDAIVFNSWQQYGTPSYWVQHFFKNSNGADLLPSTVKADSSTSLAMLVTSAVRAHNTSSGSDYLIVKAVNYGSNPLNLNLEVSGVSANRFNATESYI MLLTSAGLMDENSFTNPAKVTPQVTKATNAGPSMEVALPAYSILALQLG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 696 Download |
| MFTNMRTLVA RHRCVLLTAA GTFGLLCLLA VALSSRFSAP SLNQITPTVT LEVNVSDPGR 60 QMPATLFGLF FEEINHAGSG GLWAELVQNR GFEAGGQDTP SIFEPWYKIG SDAQVIIGTE 120 RSSPFNRNPV ALKITVLCDN GDENNNKCPK GGVGTANPGF WGMNIIAGSK YQVEFWLRSS 180 NTFNLSVAFI SANGAVLTLE IVSVDGKSNR DWSKQSIVLT AKSTDHYARL SLTTGTKGEY 240 WIDQVSAMPT DTFKGHGFRK ELATMIADLK PGFLRFPGGC YVEGVRLANA FRWRDSVGDY 300 ENRPGHYGDV WNYWSDDGFG YFEGLQLAED IGAAPIWVFN NGISHWESVP TAEIGPWVQD 360 VLEGIEFARG PVNSTWGAVR AQMGHPDPFP LLYVAVGNED CEKPYYRGNY MEFYKAIKLM 420 YPDIELISNC DGSRGPLDHP ADLYDYHIYT TANNLFSMRH SFDRTSRVGP KAFVSEYAVV 480 GADSGTGSLL ASLAEGAFLI GLELNSDIVE MASYAPLFVN ANDRRWNPDA IVFNSWQQYG 540 TPSYWVQHFF KNSNGADLLP STVKADSSTS LAMLVTSAVR AHNTSSGSDY LIVKAVNYGS 600 NPLNLNLEVS GVSANRFNAT ESYIMLLTSA GLMDENSFTN PAKVTPQVTK ATNAGPSMEV 660 ALPAYSILAL QLGLNTINRS AEEVVQITSR KSLRQ* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| COG3534 | AbfA | 2.0e-29 | 257 | 674 | 494 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] |
| pfam06964 | Alpha-L-AF_C | 7.0e-40 | 475 | 666 | 206 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. |
| smart00813 | Alpha-L-AF_C | 4.0e-46 | 475 | 666 | 203 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABR16223.1 | 0 | 44 | 681 | 28 | 661 | unknown [Picea sitchensis] |
| GenBank | ACN40206.1 | 0 | 44 | 681 | 28 | 662 | unknown [Picea sitchensis] |
| RefSeq | NP_187685.1 | 0 | 26 | 672 | 12 | 655 | ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds / xylan 1,4-beta-xylosidase [Arabidopsis thaliana] |
| RefSeq | XP_001768782.1 | 0 | 62 | 695 | 1 | 634 | predicted protein [Physcomitrella patens subsp. patens] |
| RefSeq | XP_001782031.1 | 0 | 25 | 692 | 5 | 673 | predicted protein [Physcomitrella patens subsp. patens] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3s2c_L | 0.00000000000002 | 257 | 641 | 48 | 451 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_K | 0.00000000000002 | 257 | 641 | 48 | 451 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_J | 0.00000000000002 | 257 | 641 | 48 | 451 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_I | 0.00000000000002 | 257 | 641 | 48 | 451 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
| PDB | 3s2c_H | 0.00000000000002 | 257 | 641 | 48 | 451 | A Chain A, Structure Of The Thermostable Gh51 Alpha-L-Arabinofuranosidase From Thermotoga Petrophila Rku-1 |
