y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s112_158V6.1 |
Family | CE8 |
Protein Properties | Length: 413 Molecular Weight: 43657.2 Isoelectric Point: 4.2866 |
Chromosome | Chromosome/Scaffold: 112 Start: 758057 End: 761936 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 127 | 404 | 0 |
YTSVQDAIDAVPENNTDLYTIEILSGTYTEKVSIPATKPFITLQGAGRNNTIISYNDTANSTGSTMKSATFTVFAANFTARNVTFQNSAPHAVAGETGAQ AVALRIAGDMAAFYGCGFISSQDTICDEEGRHYFRDCYVEGNIDIIWGNGQSLYEYTQIQSTANNSSGSITAQGRASDKETTGFTFVGGSITGTGDNILG RAYGLYSRVFFIDTYMEDIINPVGWSDWPTVTASKGHEHYGEYGNTGPGANLTGRVSWMVKLTEAEAANFSSLSFIDG |
Full Sequence |
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Protein Sequence Length: 413 Download |
MPWIYDRAMV VLLSSMPDPC HGQSWWSWAS SPPSPSASTN SSTATPPSPL YTSPAPPPSP 60 SAPTTPATPP SPTFSVPSTP AAPPSPTFGV PTTPSTLPSS APTTSSTTST TLIVMTTSFF 120 FGPETIYTSV QDAIDAVPEN NTDLYTIEIL SGTYTEKVSI PATKPFITLQ GAGRNNTIIS 180 YNDTANSTGS TMKSATFTVF AANFTARNVT FQNSAPHAVA GETGAQAVAL RIAGDMAAFY 240 GCGFISSQDT ICDEEGRHYF RDCYVEGNID IIWGNGQSLY EYTQIQSTAN NSSGSITAQG 300 RASDKETTGF TFVGGSITGT GDNILGRAYG LYSRVFFIDT YMEDIINPVG WSDWPTVTAS 360 KGHEHYGEYG NTGPGANLTG RVSWMVKLTE AEAANFSSLS FIDGSLWLSS QT* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 3.0e-86 | 127 | 408 | 282 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-86 | 127 | 409 | 289 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-90 | 127 | 408 | 283 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 2.0e-90 | 127 | 410 | 293 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-106 | 127 | 408 | 291 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27989.1 | 0 | 127 | 409 | 26 | 312 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001752210.1 | 0 | 127 | 410 | 100 | 385 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001758980.1 | 0 | 156 | 412 | 1 | 258 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769218.1 | 0 | 156 | 408 | 2 | 252 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769825.1 | 0 | 152 | 412 | 1 | 259 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 127 | 412 | 19 | 312 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-38 | 127 | 410 | 15 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.00000000000005 | 127 | 285 | 44 | 217 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.0000000000003 | 127 | 397 | 18 | 329 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.0000000000003 | 127 | 397 | 18 | 329 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DC958033 | 265 | 148 | 401 | 0 |
DC955236 | 218 | 207 | 413 | 0 |
DC952657 | 218 | 207 | 413 | 0 |
DC957093 | 217 | 208 | 413 | 0 |
DC936615 | 250 | 134 | 370 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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