Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s112_172V6.1 |
Family | PL1 |
Protein Properties | Length: 405 Molecular Weight: 44084.2 Isoelectric Point: 5.7092 |
Chromosome | Chromosome/Scaffold: 112 Start: 815881 End: 817916 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 129 | 328 | 0 |
WIVFSRNMNIKLKEELLMNSYKTLDGRGANVHIAGGACITAQYVSNIIIHGIHIHDCKSTGPADIRSSPDHFGYRGRADGDAVSIFGSHDIWVDHNYLSN GADGLVDVIEGSTGITISNNYFSNHDKVMLLGAHPDDSFDTAMLVTVAFNHFGEGLVERIPRCRYGYFHVVNNYYTSWAMYAIGGSENPTINSEGNHFVA |
Full Sequence |
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Protein Sequence Length: 405 Download |
MAILRRDAAF FWLIAFALPQ CWAARPLEVS AKSAAPILSD SAHVQTDNFT RRVLAGCGSG 60 NPIDDCWRCD PLWRENRQGL ANCAIGFGRS AVGGRNGEIY VVTDESDDDV VNPAPGTLRW 120 GVVQSEPLWI VFSRNMNIKL KEELLMNSYK TLDGRGANVH IAGGACITAQ YVSNIIIHGI 180 HIHDCKSTGP ADIRSSPDHF GYRGRADGDA VSIFGSHDIW VDHNYLSNGA DGLVDVIEGS 240 TGITISNNYF SNHDKVMLLG AHPDDSFDTA MLVTVAFNHF GEGLVERIPR CRYGYFHVVN 300 NYYTSWAMYA IGGSENPTIN SEGNHFVAGN AKEITKRIND DGSKIDGWEN WNWRSAGDLF 360 ENGAFFIDSG SRGSGSFYAK ATSFSARPAV LVASMTNDAG PLMV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR04247 | NosD_copper_fam | 0.0005 | 178 | 252 | 75 | + nitrous oxide reductase family maturation protein NosD. Members of this family include NosD, a repetitive periplasmic protein required for the maturation of the copper-containing enzyme nitrous-oxide reductase. NosD appears to be part of a complex with NosF (an ABC transporter family ATP-binding protein) and NosY (a six-helix transmembrane protein in the ABC-2 permease family). However, NosDFY-like complexes appear to occur also in species whose copper requiring enzymes are something other than nitrous-oxide reductase. | ||
COG3866 | PelB | 6.0e-31 | 77 | 326 | 262 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-65 | 141 | 326 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-70 | 135 | 330 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001764359.1 | 0 | 28 | 404 | 16 | 385 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769269.1 | 0 | 57 | 404 | 1 | 348 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001774203.1 | 0 | 48 | 404 | 1 | 359 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001783165.1 | 0 | 47 | 404 | 5 | 364 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001785953.1 | 0 | 46 | 404 | 31 | 384 | predicted protein [Physcomitrella patens subsp. patens] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 61 | 400 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 61 | 400 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-18 | 91 | 327 | 21 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000001 | 120 | 303 | 102 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.000000000000007 | 139 | 347 | 78 | 318 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |