y
Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s112_175V6.1 |
Family | CE8 |
Protein Properties | Length: 385 Molecular Weight: 42140.7 Isoelectric Point: 5.6275 |
Chromosome | Chromosome/Scaffold: 112 Start: 827191 End: 828998 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 86 | 368 | 0 |
VDQSGRGDFVSVQAAVNAVPENSEQRTIIEIKAGVYEERVVIPSNKPHITMQGEGMNVTIITGNDNAAKRGNEGSVTVAIYADHFTAVDMGFKNLAPMPE PGELGKQAVALVICGDKAAFYDCGFYGAQDTLFDYAGRHYFKNCFIEGSIDFIFGDGRSLYEGCEIHVIAETTGSITAQARSKPEDRSGFVFMDCTIMGH GLVWLGRAWGTSSRVVFVRSYMDDIIIPAGWTDFGDSTVHNTSFYAQYKCSGPGAESAVRVPWSYELNDDDAKQFLDLDFIDG |
Full Sequence |
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Protein Sequence Length: 385 Download |
MGMGPLRLIC LWVVLLFATV ILLVVISHSP SGALPRIPRS VRSDLKKLAS KTIPNNIPQI 60 FSNETYSRPC QGSPTSSKNT SYFFRVDQSG RGDFVSVQAA VNAVPENSEQ RTIIEIKAGV 120 YEERVVIPSN KPHITMQGEG MNVTIITGND NAAKRGNEGS VTVAIYADHF TAVDMGFKNL 180 APMPEPGELG KQAVALVICG DKAAFYDCGF YGAQDTLFDY AGRHYFKNCF IEGSIDFIFG 240 DGRSLYEGCE IHVIAETTGS ITAQARSKPE DRSGFVFMDC TIMGHGLVWL GRAWGTSSRV 300 VFVRSYMDDI IIPAGWTDFG DSTVHNTSFY AQYKCSGPGA ESAVRVPWSY ELNDDDAKQF 360 LDLDFIDGAS WIHATRKFVD NLPS* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 9.0e-103 | 72 | 372 | 301 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-107 | 85 | 372 | 290 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 3.0e-108 | 69 | 372 | 324 | + probable pectinesterase | ||
PLN02304 | PLN02304 | 1.0e-113 | 74 | 372 | 308 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 9.0e-134 | 81 | 372 | 300 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_001752210.1 | 0 | 72 | 373 | 72 | 384 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769270.1 | 0 | 31 | 384 | 29 | 382 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769817.1 | 0 | 88 | 373 | 58 | 351 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002330522.1 | 0 | 92 | 372 | 92 | 379 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 81 | 372 | 82 | 381 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 86 | 375 | 11 | 311 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4.06377e-44 | 86 | 382 | 7 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-22 | 86 | 340 | 35 | 335 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 9e-20 | 94 | 251 | 18 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 9e-20 | 94 | 251 | 18 | 190 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |