Basic Information | |
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Species | Physcomitrella patens |
Cazyme ID | Pp1s112_177V6.1 |
Family | CE8 |
Protein Properties | Length: 371 Molecular Weight: 39861.7 Isoelectric Point: 7.4566 |
Chromosome | Chromosome/Scaffold: 112 Start: 830755 End: 833098 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 76 | 362 | 0 |
IVVDQSGAGNFKTVNEALNSIPEHSKSPVTIKVNAGTYNERVVIPKSKEFITLQGAGRDVTKITASNAAGNSGTTYTSATFGVSAPHFTARNISFENSSP PPDGGAQQQAVALRTTGDMNAFYGCAFYGHQDTLYDHRGRHFFKDTLIVGTVDFIFGDGKSLYKNCELRVLPSSGGSLTAQKRLSGSEDTGYSFVNCKVT GSGPPQVYLGRAWGPYSRVIFAFTEFANIIKPEGWYNWGDPSREKTVFYGMYKCFGPGASSPSRAYYSKELTDAEAAPFLSLNYIDG |
Full Sequence |
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Protein Sequence Length: 371 Download |
MAGLGYTVCL LVTVALVCSA EPAQGSQKVP ETREEVIASF ASWVQRVGEK HAAWERAAKT 60 ATTADEFASK VGETVIVVDQ SGAGNFKTVN EALNSIPEHS KSPVTIKVNA GTYNERVVIP 120 KSKEFITLQG AGRDVTKITA SNAAGNSGTT YTSATFGVSA PHFTARNISF ENSSPPPDGG 180 AQQQAVALRT TGDMNAFYGC AFYGHQDTLY DHRGRHFFKD TLIVGTVDFI FGDGKSLYKN 240 CELRVLPSSG GSLTAQKRLS GSEDTGYSFV NCKVTGSGPP QVYLGRAWGP YSRVIFAFTE 300 FANIIKPEGW YNWGDPSREK TVFYGMYKCF GPGASSPSRA YYSKELTDAE AAPFLSLNYI 360 DGGLWVKEGI * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 6.0e-99 | 71 | 366 | 304 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 4.0e-100 | 75 | 367 | 293 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 2.0e-106 | 74 | 367 | 303 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 8.0e-118 | 37 | 365 | 331 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 6.0e-141 | 22 | 367 | 354 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN63186.1 | 0 | 40 | 367 | 53 | 378 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_001764301.1 | 0 | 80 | 366 | 1 | 287 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769271.1 | 0 | 1 | 370 | 1 | 370 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002330522.1 | 0 | 21 | 367 | 40 | 380 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002514210.1 | 0 | 21 | 367 | 37 | 382 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 68 | 367 | 2 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 77 | 367 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 7e-25 | 75 | 354 | 7 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 7e-25 | 75 | 354 | 7 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 7e-25 | 75 | 354 | 7 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |